Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887935.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq24 226 3e-54 >seq24 Length=118493 Score = 226 bits (250), Expect = 3e-54 Identities = 593/893 (66%), Gaps = 20/893 (2%) Strand=Plus/Plus Query 16672 TCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATT 16731 ||| ||||| || || | |||||| || || || ||||| || | || ||||||||| Sbjct 55723 TCTCTGGTATTCTGCGACTCTTTTTTCAAAGAAATTGGTTTTTCCTTGTAAAGATATATT 55782 Query 16732 CTCCATGAAATCAAAAGGATT---AGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGC 16788 |||||||||||||| ||||| ||| | || || ||||||| | || || || | Sbjct 55783 TTCCATGAAATCAAATGGATTTTCAGT-GTTGTAA--TGTTTAGAGAATCCTAGATCAAC 55839 Query 16789 GATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTAT 16848 | | | || || ||||||||||| || | ||||| ||| ||||||||||| || Sbjct 55840 TAAGAGATTGTCAGCCACAAATTCTATGTAATTACACATAGATTTACAGTTCATTCCAAT 55899 Query 16849 AAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAA- 16907 | || ||| || ||| ||| | | |||| ||| || || | || ||||| |||| Sbjct 55900 TAAACTTACGGGTAGACTTTCAGAAACAAATTCTTGTTCAATTGCTACTGCTTCTTTAAC 55959 Query 16908 TAATACTAGCAACTCGTTCCTCGGACGGTGTATGTT-TAAGATG----TTTAAACATCAG 16962 || | | | ||| ||| | | | | | | || |||| || ||||| || Sbjct 55960 TATTTCGA-TTACTGTTTCATATGGTGCTTTTTCTTCTAAG-TGAGCATTTAA----GAG 56013 Query 16963 ACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAA 17022 |||||| || || ||| | ||| || ||||| ||||| | ||| || || || || | Sbjct 56014 ACATGCAAATTCAACATGCACTCCTTCATCTCTACTGATTAATTCATTGGAGAAAGTAAG 56073 Query 17023 CCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAA 17082 || ||||| ||| ||||| || | ||| ||||| | || || || ||||| ||||| Sbjct 56074 ACCTGGCATTAATCCACGTTTTTTAAGCCAGAATATGGATGCAAAAGATCCAGAGAAGAA 56133 Query 17083 TATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACG 17142 ||||| || ||| | ||||| || |||| || | || | | | ||| | Sbjct 56134 AATACCTTCTACGCACGCAAATGCAATTATTCTTGTAGCAAAACATGATTTTTTATCCGT 56193 Query 17143 AATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTT 17202 ||||||||| ||| || ||||| | || || || || || || || Sbjct 56194 TATCCATTTCATAGTCCAGTCTGCTTTATTTTTAATTGTTGGTATTGTAGAAATTGCGTT 56253 Query 17203 AAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACAT 17262 |||||| ||||||| || | | || | ||||| || || || || | |||||| Sbjct 56254 AAATAAAAAATCTTTTTTCTCTTGTTCTCTAATATATGTTTCTATTAGCAATGAGTACAT 56313 Query 17263 TTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTAT 17322 || || ||||| || || || ||| || ||||| |||| |||| ||||| | ||| Sbjct 56314 CTCAGAATGTATATTTTCTATCATTATTTGGAATCCATAAACACATCTAGCTTCTGGTAT 56373 Query 17323 TTGAACTTCCAC-GTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGG 17381 ||||||||| | | | ||| ||| |||||||| || || || || || || | Sbjct 56374 CTGAACTTCCGCTGCAAAAT-TTTCTAAAAGATTTTCATTAACAATCCCATCTGATGCTG 56432 Query 17382 CGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGT 17441 | ||||| ||||| | || | || |||| | |||| || ||||| | ||| | Sbjct 56433 CAAAAAATGCCAACACATAACTTATAAAATGTCTTTCATCATCATTAAGACCATTCCAAT 56492 Query 17442 CCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTT 17501 | | |||||| || |||| ||| |||||||| | |||||||| | | ||||| | Sbjct 56493 CGTCTAAATCATTAGATAAATCTACTTCTTCAGCAGTCCAAAACGATGAAAGTGCCTGCT 56552 Query 17502 TATACATATTCCAAATATCATTGTATTGTATGGGGAATACAACATATCTATCT 17554 |||| | || ||| ||| || ||||| ||| || || | |||| |||||||| Sbjct 56553 TATATAAATCCCATATACGATCGTATTTTATTGGAAACAAAACAAATCTATCT 56605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517543076965200