Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887935.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq390 127 1e-24 seq5 125 5e-24 >seq390 Length=4512 Score = 127 bits (140), Expect = 1e-24 Identities = 265/390 (68%), Gaps = 5/390 (1%) Strand=Plus/Minus Query 101524 TTATTTTTCTTAAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAA 101583 ||| || | |||||||||||||| |||||| || | || || | ||| ||||||| Sbjct 470 TTAATTGTTTTAAACAGCCATATCCATTTTTATAGTTGGATGACTTTCATAATTTTCTAG 411 Query 101584 TATAATGTCATCTGCTTTAAAGTCATCAATGCA-TGAAACATTTC--TAGCAAATCTAAG 101640 ||||| ||||| || ||| || | || | | | |||| | |||| ||| Sbjct 410 TATAAAATCATCAAATTCAAAATCGTAGATACTGTCGTATTTTTCCTTTTTAAATTTAAT 351 Query 101641 TGTTGGAAACGGTCTAGGAGTTCGCGTCAACT-GCATTTTAAGAGCATCAATGTGATCTA 101699 | | || || || ||| |||| |||| | || |||| | | |||||||||| Sbjct 350 TTTAGGGAATGGATAAGGTGTTCTT-TCAAGTTGCTTTTTTATTGGCTCAATGTGATTCT 292 Query 101700 CATAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACAT 101759 |||| | ||| |||| |||| || ||||||||| || || || ||| ||| || | Sbjct 291 CATATAAATGAACATCACCTAAAGAATGGATAAATTCACCTGGTTCTAATCCAGTAACTT 232 Query 101760 GAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCA 101819 || | ||| ||| | ||| ||||| |||||||| ||||| || ||||| || |||| Sbjct 231 TTGCCACCATTAAAGCAAGAAGTGAATAACTAGCAATATTAAAAGGTACTCCCAATCCCA 172 Query 101820 TATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGAC 101879 ||||| | ||||||||||| | |||| | || |||| ||||||||||||| Sbjct 171 TATCACCGGATCTTTGATATAAAAGACAACTTAATTTATTATCAGCGACATAAAATTGAA 112 Query 101880 TTAATACATGACAAGGCGGCAACACCATTT 101909 ||| |||||| || || | |||||| Sbjct 111 ATAAACAATGACATGGTGGAAGAGCCATTT 82 >seq5 Length=4344 Score = 125 bits (138), Expect = 5e-24 Identities = 257/380 (68%), Gaps = 3/380 (1%) Strand=Plus/Minus Query 101533 TTAAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATATAATGTC 101592 |||||||||||||| |||||| || | || || | ||| ||||||||||||| || Sbjct 461 TTAAACAGCCATATCCATTTTTATAGTTGGATGACTTTCATAATTTTCTAATATAAAATC 402 Query 101593 ATCTGCTTTAAAGTCATCAATGCA-TGAAACATTTC--TAGCAAATCTAAGTGTTGGAAA 101649 ||| || ||| || | || | | | |||| | |||| ||| | | || || Sbjct 401 ATCAAATTCAAAATCGTAGATACTGTCGTATTTTTCCTTTTTAAATTTAATTTTAGGGAA 342 Query 101650 CGGTCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTG 101709 || ||| |||| || ||| |||| | | || ||||||| |||| | || Sbjct 341 TGGATAAGGTGTTCTTTCTAATTGCTTTTTTATTGGTTCGATGTGATTCTCATATAAATG 282 Query 101710 AGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCAT 101769 | ||||||||| || ||||||||| || || || ||| ||| || | || | ||| Sbjct 281 AACATCTCCTAAAGAATGGATAAATTCACCTGGTTCTAATCCAGTAACCTTTGCCACCAT 222 Query 101770 GCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGA 101829 ||| | ||| ||||| |||||||| ||||| || ||||| || ||||||||| | || Sbjct 221 TAAAGCAAGAAGGGAATAACTAGCAATATTAAAAGGTACTCCCAATCCCATATCACCAGA 162 Query 101830 TCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTTAATACATG 101889 ||||||||| | |||| | || ||| ||||||||||||| ||| ||| Sbjct 161 TCTTTGATATAAAAGACAACTTAATTTGTTATCTGCGACATAAAATTGAAATAAACAATG 102 Query 101890 ACAAGGCGGCAACACCATTT 101909 ||| || || | |||||| Sbjct 101 ACATGGTGGAAGAGCCATTT 82 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361249482927890