Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887935.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq390 140 2e-28 seq5 125 5e-24 >seq390 Length=4512 Score = 140 bits (154), Expect = 2e-28 Identities = 293/432 (68%), Gaps = 5/432 (1%) Strand=Plus/Minus Query 96898 TAAACAGCCATGGGCATTTTTATGCTAGGGTAAGGGTTATAGTTTTCCAGAATAATGTCA 96957 ||||||||||| ||||||||| | || | | | ||| ||||| || |||| ||| Sbjct 460 TAAACAGCCATATCCATTTTTATAGTTGGATGACTTTCATAATTTTCTAGTATAAAATCA 401 Query 96958 TTTGCTTTAAAATCATCAATA--GATGCAATCTTTCTGGCAAACTTTAGTGTT-GGGAAA 97014 | || |||||| | ||| | | | | || || || |||| | || ||||| Sbjct 400 TCAAATTCAAAATCGTAGATACTGTCGTATTTTTCCTTTTTAAATTTAATTTTAGGGAAT 341 Query 97015 GGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGA 97074 || || |||| ||| |||| | | | | |||||||||||| |||| | ||| Sbjct 340 GGATAAGGTGTTCTTTCAAGTTGCTTTTTTATTGGCTCAATGTGATTCTCATATAAATGA 281 Query 97075 GCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATA 97134 |||| ||||||| || |||||||| || || |||| |||| || | || | ||| Sbjct 280 ACATCACCTAAAGAATGGATAAATTCACCTGGTTCTAATCCAGTAACTTTTGCCACCATT 221 Query 97135 CAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGAT 97194 ||| | || ||||| |||||||| |||||||| || || | |||||||||| | ||| Sbjct 220 AAAGCAAGAAGTGAATAACTAGCAATATTAAAAGGTACTCCCAATCCCATATCACCGGAT 161 Query 97195 CTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACTCAATACATGA 97254 ||||||||||| |||| | || |||| |||||||| ||| || |||| Sbjct 160 CTTTGATATAAAAGACAACTTAATTTATTATCAGCGACATAAAATTGAAATAAACAATGA 101 Query 97255 CAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGC-ACACATCAACATTCT 97313 || || || | ||||||| | | | | | |||||| || ||| || | |||||| Sbjct 100 CATGGTGGAAGAGCCATTTCCCGTAATTGTTCGGGATTCCATGCGACA-ATAACCATTCT 42 Query 97314 TCTATCGGTTGG 97325 |||| |||||| Sbjct 41 TCTACTGGTTGG 30 >seq5 Length=4344 Score = 125 bits (138), Expect = 5e-24 Identities = 195/276 (71%), Gaps = 2/276 (1%) Strand=Plus/Minus Query 97051 TCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACT 97110 || ||||||||| |||| | ||| |||||||||||| || |||||||| || || || Sbjct 304 TCGATGTGATTCTCATATAAATGAACATCTCCTAAAGAATGGATAAATTCACCTGGTTCT 245 Query 97111 AAATCAGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGC 97170 || |||| || | || | ||| ||| | || ||||| |||||||| |||||||| Sbjct 244 AATCCAGTAACCTTTGCCACCATTAAAGCAAGAAGGGAATAACTAGCAATATTAAAAGGT 185 Query 97171 ACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACAC 97230 || || | |||||||||| | |||||||||||||| |||| | || ||| Sbjct 184 ACTCCCAATCCCATATCACCAGATCTTTGATATAAAAGACAACTTAATTTGTTATCTGCG 125 Query 97231 ACATAAAACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACA 97290 |||||||| ||| || |||||| || || | ||||||| | | | | | | Sbjct 124 ACATAAAATTGAAATAAACAATGACATGGTGGAAGAGCCATTTCCCGTAATTGTTCGGGA 65 Query 97291 TTCCAAGC-ACACATCAACATTCTTCTATCGGTTGG 97325 ||||| || ||| || | |||||||||| |||||| Sbjct 64 TTCCATGCGACA-ATAACCATTCTTCTACTGGTTGG 30 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346782351692300