Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887935.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq24 289 4e-73 seq370 284 2e-71 >seq24 Length=118493 Score = 289 bits (320), Expect = 4e-73 Identities = 611/899 (68%), Gaps = 23/899 (3%) Strand=Plus/Plus Query 49672 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCC 49731 |||||||| | || | |||||| || ||||| |||||||||| || |||||||||||| Sbjct 55727 TGGTATTCTGCGACTCTTTTTTCAAAGAAATTGGTTTTTCCTTGTAAAGATATATTTTCC 55786 Query 49732 ATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAAT 49791 ||||||||||| ||||| | || ||| ||| ||||| | ||| | | Sbjct 55787 ATGAAATCAAATGGATTTTCAGTGTTGTAATGTTTAGAGAATCCTAGATCAACTAAGAGA 55846 Query 49792 CTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 49851 | || || ||||||||||| || | ||| || ||| |||||||| || | | Sbjct 55847 TTGTCAGCCACAAATTCTATGTAATTACACATAGATTTACAGTTCATTCCAATTAAACTT 55906 Query 49852 ACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGAT 49911 || || ||| ||| || ||||||||||||||| | ||| || ||| ||| | || | Sbjct 55907 ACGGGTAGACTTTCAGAAACAAATTCTTGTTCAATTGCTACTGCTTCT-TTA-ACTATTT 55964 Query 49912 CTA--ACGGTTTCTTCACTCGGTGGATGCAATAAATG----TTTAAACATCAAACATGCG 49965 | | || ||||| | | | | ||| || ||||| | |||||| Sbjct 55965 CGATTACTGTTTCATATGGTGCTTTTTCTTCTAAGTGAGCATTTAAG----AGACATGCA 56020 Query 49966 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGC 50025 || || |||| || || |||||||| |||| ||| ||||| || || || || ||| Sbjct 56021 AATTCAACATGCACTCCTTCATCTCTACTGATTAATTCATTGGAGAAAGTAAGACCTGGC 56080 Query 50026 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCT 50085 |||| ||||| ||||||||||| |||||||| ||||| || ||||| ||||| || ||| Sbjct 56081 ATTAATCCACGTTTTTTAAGCCAGAATATGGATGCAAAAGATCCAGAGAAGAAAATACCT 56140 Query 50086 TCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATG---TATCCAC 50142 ||||| ||||| |||| | ||| || ||| | | | || |||||| Sbjct 56141 TCTACGCACGCAAATGCAATTATTCTTGTAGCAAAACATGATTTTTTATCCGTTATCCAT 56200 Query 50143 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 50202 || || ||| || || || ||||| | || || || || || ||||| | | Sbjct 56201 TTCATAGTCCAGTCTGCTTTATTTTTAATTGTTGGTATTGTAGAAATTGCGTTAAATAAA 56260 Query 50203 TAGt-ttttttCATTACTATCTTTAACATAAGTATCGATCA--AAAGACTATACATTTCC 50259 | | ||||||| | | ||| ||| ||| || || || | || || || ||| || Sbjct 56261 AAATCTTTTTTCTCTTGT-TCTCTAATATATGTTTCTATTAGCAATGAGTA--CATCTCA 56317 Query 50260 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGC 50319 ||||| || ||||| || || || ||||| || | ||||||||| || | ||||| Sbjct 56318 GAATGTATATTTTCTATCATTATTTGGAATCCATAAACACATCTAGCTTCTGGTATCTGA 56377 Query 50320 ACTTCTG-TACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 50378 ||||| | | |||||| ||| | ||||||||| || || || || |||||||| Sbjct 56378 ACTTCCGCTGCAAAATT-TTCTAAAAGATTTTCATTAACAATCCCATCTGATGCTGCAAA 56436 Query 50379 AAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATT 50438 ||| ||||| |||| ||||||||||| |||| | | || ||||||||| | Sbjct 56437 AAATGCCAACACATAACTTATAAAATGTCTTTCATCATCATTAAGACCATTCCAATCGTC 56496 Query 50439 GATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 50498 | ||| ||||||| |||||||||||| | |||||||| |||| ||||| ||||| Sbjct 56497 TAAATCATTAGATAAATCTACTTCTTCAGCAGTCCAAAACGATGAAAGTGCCTGCTTATA 56556 Query 50499 CATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTG 50557 | || ||| || || |||| ||||| || | ||||||||||| | | |||||| Sbjct 56557 TAAATCCCATATACGATCGTATTTTATTGGAAACAAAACAAATCTATCTTCAGTTGGTG 56615 >seq370 Length=149473 Score = 284 bits (314), Expect = 2e-71 Identities = 997/1536 (65%), Gaps = 38/1536 (2%) Strand=Plus/Minus Query 79032 TAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGT 79091 |||| || ||| | || | ||| || |||||||| ||||||| || ||| | || Sbjct 55746 TAAATCTTTAATTAAATAAGAATTTACAACTTGAAAATCTCCAGCTAAAGTTCTTCTGGT 55687 Query 79092 GTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGA 79151 |||||||| || | ||||| | |||||||| ||||||||||| | || || Sbjct 55686 ATAAATATTTGAAGTTAAAGGTTCTATACATTCATTAAAACCCAAAATTTGGGATGTAGA 55627 Query 79152 TGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTATC 79211 ||| || |||||| || || ||||| |||||||| || | | ||||||| || Sbjct 55626 TGCTGTAGGCATAACAGCAACAAATAATGAATTTCTAACTCCATGCTTTTTGATTTTTTC 55567 Query 79212 TTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAG 79271 | | | | |||||||| | | ||| | ||| || | | |||| | |||| Sbjct 55566 TCTCAAAATATCCCAATCTAATAAATCTGTTGGGGTGGTTTTATACATATCAAAATGTAA 55507 Query 79272 AATACCGTTACT-AGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTA 79330 | ||| | ||| | | | ||||| |||||||| |||| || | | ||| |||| Sbjct 55506 TAGACCCTGACTCAATGGA-GATCCCTCATATGTTTCGTAAGTACCATACCGTTCTGCTA 55448 Query 79331 ATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGAT 79390 ||||| ||| | || ||||| |||||||| ||||||||||| | |||||| | || Sbjct 55447 ATTCAGTACTTGATTCCAATGCAGAATAATAAATAGTTTCGAAAATTTGCTTATTTA-AT 55389 Query 79391 CTTGT-GCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCT 79449 | | |||||| ||||||||||| ||| | |||||| | || ||||||||| Sbjct 55388 AATCTAGCTTCTTCACTATCAAATGGCATTCTTAGAATAATAAATACATCGGCTAATCCT 55329 Query 79450 TGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGA 79509 |||||||||||||| ||||||||||||||| ||||| ||| || |||| | ||| Sbjct 55328 TGAACACCAATACCCATAGGTCTATGTCTCATATTACTTTTTTTAGTTTCTTCTACTGGA 55269 Query 79510 TAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACATCCTTT 79569 || | | | ||||| | ||| | ||| | || | ||||| || | || ||| Sbjct 55268 TATTTTGTTCTGTCTATTACCCTATCCAAATTTTTTACAAGAACTTTTACTATCTCTTTT 55209 Query 79570 AGTTTGAGAAAATCAAATCGTCCATCTATTA-CAAACATGTTCAACGCGACAGATGCCAG 79628 ||||| | ||||||||| |||| | | ||| || || | | ||||| | Sbjct 55208 AGTTTTATGAAATCAAATTTGTTATCTTTAATGAAAGTTGGAAGAC-CTATTGATGCTAA 55150 Query 79629 ATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACT 79688 ||||||||| |||| |||| || | | || | |||||| | || || ||| Sbjct 55149 ATTACAAACAGCTATTTCATCAGGCTTAGTTACTTCAACTATTTCTGCACAAAGATTAGA 55090 Query 79689 ACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAG 79748 ||| || || | ||| | ||||| || ||| | | | ||||||| ||| ||||||| Sbjct 55089 ACATTTTATAGATCCAATATTTTTCTGGTTAGAATATCTATTACACGTATCTTTATAAAT 55030 Query 79749 AATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC 79808 ||||| ||| |||| ||||| || || | ||| || |||| |||||| | | |||| Sbjct 55029 TATGAAAGGATTACCTGTTTCTATTTGTGTTTCAATTATCGTTTTCCAAAGATGTTGAGC 54970 Query 79809 CTTTA------TTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTC 79862 |||| |||| | | ||| |||| | ||| |||| | ||| | | | | Sbjct 54969 TTTTACAGTTCTTATTGCC---AATC-CTTT--TGCTTCATATTCTTCATAAAGTTTTAC 54916 Query 79863 GAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCA 79922 ||||| || || ||| |||| | || | | | | | ||||| Sbjct 54915 AAACTCTTCATTGTGTTTCTCCCATAAATCAGGTGCTGTATCCGCAGAAAAAAGTGACCA 54856 Query 79923 CTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAG 79982 ||| || || | |||| |||||| || | ||| || | |||||| ||| ||||| Sbjct 54855 ATCTTTATTTTCTTCGACTCTTTTCATGAATAAATCTGGTACCCAAAGTCCTAAAAATAA 54796 Query 79983 ATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA-A 80041 |||||| ||||| || || ||||| ||||||| | | || | || |||| | Sbjct 54795 ATCTCTTGTTCTTACTTCGTCTTTTCCAACATTCTTTCTTAATTCTA-AAAATTCATAGA 54737 Query 80042 TATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCT 80101 | || |||||| ||||| | ||||| ||||| | || |||| || |||||||| | Sbjct 54736 TTTCTACATGCCATGGTTCTATGTATACTGCCATTGCACCAGGTCTCTTTTTTCCTCCTT 54677 Query 80102 GATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA-CATTGGAATAATACCATTGGAT 80160 ||| || || | | || | || || | | || ||| || | || || ||| Sbjct 54676 GATTTACATACTTTGTTGT-TGCTTCAAATGTTTTAAGCATAGGTACAACTCCGAGTGAT 54618 Query 80161 GTACCATTGGTCCCGGAGA---TATAG--CTTCCACTGGCACGAATATTACTAATTGATA 80215 | ||| || | ||| ||| | ||| | || | | |||| ||| | Sbjct 54617 CTTCCA-----CCTGTAGATTTTATTGTAGATCCTTTTGCTCTCACATTATGAATATTAA 54563 Query 80216 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 80275 |||| || ||||| ||||||| || | || || ||| | ||||| | || | Sbjct 54562 TTCCTAGACCTCCTGCACTTTTAGATATAAGAGCACAGTTTTTCACAGTATCGAATATAC 54503 Query 80276 CCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 80335 | ||||| ||| || | || | | |||||||| | || ||| | | | | Sbjct 54502 CTTCTATAGAATCCTCTTTGATATCCAAAAGAAAACATGAACTCAATTGATTATTCTTTG 54443 Query 80336 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGT 80395 |||| | |||||| || ||||| | ||||| |||| |||||| ||||| || ||| | Sbjct 54442 TTCCGGAATTAAACAATGTAGGTGTTGCGTGAATAAAATATTTTTTAGACATTAAATTAT 54383 Query 80396 ACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACA 80455 |||||| | || ||||| || | ||||||| ||| || |||||||| || | Sbjct 54382 ACGTCTGTAACGCATCATCTATTTCTTCATCATGAATTTCTAAGGCTACACGCATAAAAA 54323 Query 80456 TGTGCTGAGGTCTTTCA-ACGAT--CTTGTTATTTATTTTCAACAAGTAAGATTTTTCCA 80512 | ||| ||||||||| || || || |||| |||| ||||| || ||| ||| || Sbjct 54322 CATCCTGTGGTCTTTCATACCATAAATTTTTAT---TTTTTAACAAATACGATCTTTGCA 54266 Query 80513 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 80548 ||||||| | |||||||| || | | ||| |||| Sbjct 54265 AAGTTTTCACCCCAAAATAATTTAAAGTAAAATCTC 54230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718265298439600