Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887935.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq24 284 1e-71 >seq24 Length=118493 Score = 284 bits (314), Expect = 1e-71 Identities = 556/806 (69%), Gaps = 18/806 (2%) Strand=Plus/Plus Query 13596 ACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAAT 13655 ||||||||||||||||| || ||||| |||| | |||||||||||||| ||||||||| Sbjct 55739 ACTCTTTTTTCAAAGAAATTGGTTTTTCCTTGTAAAGATATATTTTCCATGAAATCAAAT 55798 Query 13656 GGATTT--ATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAA 13713 |||||| | || ||| |||| | ||||| || | || | | ||||| | Sbjct 55799 GGATTTTCAGTGTTGTAATG--TTTAGAGAATCCTAGATCAACTAAGAGATTGTCAGCCA 55856 Query 13714 TAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTA 13773 ||| || || || | | |||| | | ||| ||||| || |||| |||| || | Sbjct 55857 CAAATTCTATGTAATTACACATAGATTTACAGTTCATTCCAATTAAACTTACGGGTAGAC 55916 Query 13774 TATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCT 13833 | | | | |||||||| ||| || | || || ||||| | || || | || | | Sbjct 55917 TTTCAGAAACAAATTCTTGTTCAATTGCTACTGCTTCTTTAACTAT--TTCGATTACTGT 55974 Query 13834 CATTAGAAGGAGGATATT-TTAGATGTTTAAAAATTAA---ACACGCAAAATCACAATGA 13889 | | | || | | || || | || | | |||| ||| ||||| ||| ||| Sbjct 55975 T-TCATATGGTGCTTTTTCTTCTAAGTG-AGCATTTAAGAGACATGCAAATTCAACATGC 56032 Query 13890 AGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGt 13949 | || ||||||||||| || | ||| || || || || | |||||||| ||||| ||| Sbjct 56033 ACTCCTTCATCTCTACTGATTAATTCATTGGAGAAAGTAAGACCTGGCATTAATCCACGT 56092 Query 13950 ttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCA-GC 14008 ||||| | ||| ||||| | ||||| || || || ||||| || || || || ||| || Sbjct 56093 TTTTTAAGCCAGAATATGGATGCAAAAGATCCAGAGAAGAAAATACCTTCTAC-GCACGC 56151 Query 14009 AAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCA 14068 ||| || |||| || | |||| ||| |||||| | || ||||||||| ||| ||| Sbjct 56152 AAATGCAATTATTCTTGTAGCAAAACATGATTTTTTATCCGTTATCCATTTCATAGTCCA 56211 Query 14069 TTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTC-CTTCT 14127 || | ||| |||||||| ||||| ||| || ||||||||| | || || | Sbjct 56212 GTCTGCTTTATTTTTAATTGTTGGTATTGTAGAAATTGCGTTAAATAAAAAATCTTTTTT 56271 Query 14128 CTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTT 14187 || | || | | ||| ||||| || || || || ||||| ||||| ||||| |||| Sbjct 56272 CTCTTGTTC-TCTAATATATGTTTCTATTAGCAATGAGTACATCTCAGAATGTATATTTT 56330 Query 14188 CCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCG-AGTAA 14246 | || ||| || || ||||||| ||||||||||| | || ||||||| | || Sbjct 56331 CTATCATTATTTGGAATCCATAAACACATCTAGCTTCTGGTATCTGAACTTCCGCTGCAA 56390 Query 14247 AATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATG 14306 ||| |||| | |||||||||||| || ||||| ||||||||||||||||| | Sbjct 56391 AAT-TTTCTAAAAGATTTTCATTAACAATCCCATCTGATGCTGCAAAAAATGCCAACACA 56449 Query 14307 TTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAA 14366 | | ||||| | | || |||| || || ||||||||| |||||| ||||| Sbjct 56450 TAACTTATAAAATGTCTTTCATCATCATTAAGACCATTCCAATCGTCTAAATCATTAGAT 56509 Query 14367 AGATCTACTTCATCAACTGTCCAAAA 14392 | ||||||||| ||| | |||||||| Sbjct 56510 AAATCTACTTCTTCAGCAGTCCAAAA 56535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479725661326000