Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887935.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq24 289 3e-73 >seq24 Length=118493 Score = 289 bits (320), Expect = 3e-73 Identities = 557/806 (69%), Gaps = 18/806 (2%) Strand=Plus/Plus Query 13384 ACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAAT 13443 |||||||||||||| || || ||||| |||| | |||||||||||||| ||||| ||| Sbjct 55739 ACTCTTTTTTCAAAGAAATTGGTTTTTCCTTGTAAAGATATATTTTCCATGAAATCAAAT 55798 Query 13444 GGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATA 13503 |||||| | | | |||| | ||||| || | ||| | | ||||| | | Sbjct 55799 GGATTTTCAGTGTTGTAATGTTTAGAGAATCCTAGATCAACTAAGAGATTGTCAGCCACA 55858 Query 13504 AACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATA 13563 || || || || | | |||| | | ||| ||||| || |||| |||| || | | Sbjct 55859 AATTCTATGTAATTACACATAGATTTACAGTTCATTCCAATTAAACTTACGGGTAGACTT 55918 Query 13564 TTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCA 13623 | || | |||||||| ||| || | || || || |||| | || | | || ||| Sbjct 55919 TCAGAAACAAATTCTTGTTCAATTGCTACTGCTTC-TTTA-ACTATTTCGATTACTGTT- 55975 Query 13624 TTAGAAGGAGGATATT-TTAGATGTTTAAAAATTAA---ACACGCAAAATCACAATGAAG 13679 | | | || | | || || | || | | |||| ||| ||||| ||| ||| | Sbjct 55976 TCATATGGTGCTTTTTCTTCTAAGTG-AGCATTTAAGAGACATGCAAATTCAACATGCAC 56034 Query 13680 GCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttt 13739 || ||||||||||| || | ||| || || || || | |||||||| ||||| ||||| Sbjct 56035 TCCTTCATCTCTACTGATTAATTCATTGGAGAAAGTAAGACCTGGCATTAATCCACGTTT 56094 Query 13740 ttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCA-GCAA 13798 ||| | ||| ||||| | || || ||||| || ||||| || || || || ||| |||| Sbjct 56095 TTTAAGCCAGAATATGGATGCAAAAGATCCAGAGAAGAAAATACCTTCTAC-GCACGCAA 56153 Query 13799 ACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATT 13858 | || |||| || | |||| ||| |||||| | | ||||||||| ||| ||| | Sbjct 56154 ATGCAATTATTCTTGTAGCAAAACATGATTTTTTATCCGTTATCCATTTCATAGTCCAGT 56213 Query 13859 CAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAA---TGTTCCTTCT 13915 | | ||| |||||||| ||||| ||||| || |||||| | || |||| Sbjct 56214 CTGCTTTATTTTTAATTGTTGGTATTGTAGAAATTGCGTTAAATAAAAAATCTTTTTTCT 56273 Query 13916 CTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTT 13975 ||| || || || | ||||| || || || || ||||| ||||| ||||| |||| Sbjct 56274 CTT--GTTCTCTAA-TATATGTTTCTATTAGCAATGAGTACATCTCAGAATGTATATTTT 56330 Query 13976 CTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCG-AGTAA 14034 |||| ||| || || ||||||| |||||||||||||| || || |||| | || Sbjct 56331 CTATCATTATTTGGAATCCATAAACACATCTAGCTTCTGGTATCTGAACTTCCGCTGCAA 56390 Query 14035 AATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATG 14094 ||| ||||| | |||||||||||||| ||||| ||||||||||||||||| | Sbjct 56391 AAT-TTTCTAAAAGATTTTCATTAACAATCCCATCTGATGCTGCAAAAAATGCCAACACA 56449 Query 14095 TTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAA 14154 | | ||||| | | || |||| || || ||||||||| ||||||| ||||| Sbjct 56450 TAACTTATAAAATGTCTTTCATCATCATTAAGACCATTCCAATCGTCTAAATCATTAGAT 56509 Query 14155 AGATCTACTTCATCAACTGTCCAAAA 14180 | ||||||||| ||| | |||||||| Sbjct 56510 AAATCTACTTCTTCAGCAGTCCAAAA 56535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478586466879600