Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887935.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq24 289 4e-73 seq370 239 6e-58 >seq24 Length=118493 Score = 289 bits (320), Expect = 4e-73 Identities = 611/899 (68%), Gaps = 23/899 (3%) Strand=Plus/Plus Query 41777 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTCC 41836 |||||||| | || | |||||| || ||||| || ||||||| || |||||||||||| Sbjct 55727 TGGTATTCTGCGACTCTTTTTTCAAAGAAATTGGTTTTTCCTTGTAAAGATATATTTTCC 55786 Query 41837 ATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAAT 41896 ||||||||||| ||||| | || ||| ||| ||||| | ||| | | Sbjct 55787 ATGAAATCAAATGGATTTTCAGTGTTGTAATGTTTAGAGAATCCTAGATCAACTAAGAGA 55846 Query 41897 CTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 41956 | || || | |||||||| || | ||| || ||| |||||||| || | | Sbjct 55847 TTGTCAGCCACAAATTCTATGTAATTACACATAGATTTACAGTTCATTCCAATTAAACTT 55906 Query 41957 ACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGAT 42016 || || ||| ||| || ||||||||||||||| | || || ||| ||| | || | Sbjct 55907 ACGGGTAGACTTTCAGAAACAAATTCTTGTTCAATTGCTACTGCTTCT-TTA-ACTATTT 55964 Query 42017 C--TTACTGTTTCTTCACTCGGTGGATACAATAAATG----TTTAAACATCAAACATGCG 42070 | |||||||||| | | | | ||| || ||||| | |||||| Sbjct 55965 CGATTACTGTTTCATATGGTGCTTTTTCTTCTAAGTGAGCATTTAAG----AGACATGCA 56020 Query 42071 AAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 42130 || || |||| || ||||||||||| |||||||| ||||| || || || || ||| Sbjct 56021 AATTCAACATGCACTCCTTCATCTCTACTGATTAATTCATTGGAGAAAGTAAGACCTGGC 56080 Query 42131 ATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCT 42190 |||| ||||| ||||||||||| ||||| || ||||| |||||||| ||||| || ||| Sbjct 56081 ATTAATCCACGTTTTTTAAGCCAGAATATGGATGCAAAAGATCCAGAGAAGAAAATACCT 56140 Query 42191 TCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATG---TATCCAC 42247 ||||| |||||| ||||| | ||| || ||| | | | || |||||| Sbjct 56141 TCTACGCACGCAAATGCAATTATTCTTGTAGCAAAACATGATTTTTTATCCGTTATCCAT 56200 Query 42248 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 42307 || || ||| || || || ||||| | || || || || || ||||| | | Sbjct 56201 TTCATAGTCCAGTCTGCTTTATTTTTAATTGTTGGTATTGTAGAAATTGCGTTAAATAAA 56260 Query 42308 TAGt-ttttttCATTACTATCTTTAACATATGTATCGATCA--AAAGACTATACATTTCT 42364 | | ||||||| | | ||| ||| |||||| || || | || || || ||| || Sbjct 56261 AAATCTTTTTTCTCTTGT-TCTCTAATATATGTTTCTATTAGCAATGAGTA--CATCTCA 56317 Query 42365 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGT 42424 ||||| || ||||| || || || ||||| || | |||||| || || | | ||| Sbjct 56318 GAATGTATATTTTCTATCATTATTTGGAATCCATAAACACATCTAGCTTCTGGTATCTGA 56377 Query 42425 ACTTCTG-TACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAA 42483 ||||| | | |||||| ||| | |||||| || || || || || |||||||| Sbjct 56378 ACTTCCGCTGCAAAATT-TTCTAAAAGATTTTCATTAACAATCCCATCTGATGCTGCAAA 56436 Query 42484 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATT 42543 ||| ||||| |||| ||||||||| | |||| || | | ||||||||| | Sbjct 56437 AAATGCCAACACATAACTTATAAAATGTCTTTCATCATCATTAAGACCATTCCAATCGTC 56496 Query 42544 GATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATA 42603 | ||| ||||||| |||||||||||| | |||||||| |||| ||||| ||||| Sbjct 56497 TAAATCATTAGATAAATCTACTTCTTCAGCAGTCCAAAACGATGAAAGTGCCTGCTTATA 56556 Query 42604 CATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTTGGTG 42662 | || ||| ||| || |||| ||||| || | ||||||||||| | | |||||| Sbjct 56557 TAAATCCCATATACGATCGTATTTTATTGGAAACAAAACAAATCTATCTTCAGTTGGTG 56615 >seq370 Length=149473 Score = 239 bits (264), Expect = 6e-58 Identities = 1011/1584 (64%), Gaps = 64/1584 (4%) Strand=Plus/Minus Query 71080 TTTTTGATCTCTTCATTCCATA-ATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATT 71138 ||||| || |||| |||||| | ||| | | || ||| || ||| | || || ||| Sbjct 55781 TTTTTTATTTCTTTATTCCAGAGATTAAGTTTTAGT-AAATCTTTAATTAAATAAGAATT 55723 Query 71139 AACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTC 71198 || |||||||| ||||||| || ||| | || |||||||| || | ||||| Sbjct 55722 TACAACTTGAAAATCTCCAGCTAAAGTTCTTCTGGTATAAATATTTGAAGTTAAAGGTTC 55663 Query 71199 CACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 71258 | | |||||| ||||||||||| | || ||||| || |||||| || || || Sbjct 55662 TATACATTCATTAAAACCCAAAATTTGGGATGTAGATGCTGTAGGCATAACAGCAACAAA 55603 Query 71259 TAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAG 71318 || |||||||| ||||| | |||||| ||| | | | ||||||| | | Sbjct 55602 TAATGAATTTCTAACTCCATGCTTTTTGATTTTTTCTCTCAAAATATCCCAATCTAATAA 55543 Query 71319 ATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACT-AGCGTATGATC 71377 ||| | ||| | || | ||| | | | |||| Sbjct 55542 ATCTGTTGGGGTGGTTTTATACATATCAAAATGTAATAGACCCTGACTCAATGGA-GATC 55484 Query 71378 CTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTC 71437 | ||||||| ||||| | || | ||| |||| |||| ||| | || ||||| Sbjct 55483 CCTCATATGTTTCGTAAGTACCATACCGTTCTGCTAATTCAGTACTTGATTCCAATGCAG 55424 Query 71438 CATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGT-GCTTCCGGGCTATCAAAT 71496 ||||||||| ||||||||||| | |||||| | || | | ||||| ||||||||| Sbjct 55423 AATAATAAATAGTTTCGAAAATTTGCTTATTTA-ATAATCTAGCTTCTTCACTATCAAAT 55365 Query 71497 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTG 71556 || ||| | |||||| | || |||||||||||||| |||||||| |||||||| Sbjct 55364 GGCATTCTTAGAATAATAAATACATCGGCTAATCCTTGAACACCAATACCCATAGGTCTA 55305 Query 71557 TGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 71616 |||||| ||||| ||| || |||| | ||||| | | | ||||| | || Sbjct 55304 TGTCTCATATTACTTTTTTTAGTTTCTTCTACTGGATATTTTGTTCTGTCTATTACCCTA 55245 Query 71617 TTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCA 71676 | | |||| | || | ||||| || | || |||||||| | ||||||||| | | Sbjct 55244 TCCAAATTTTTTACAAGAACTTTTACTATCTCTTTTAGTTTTATGAAATCAAATTTGTTA 55185 Query 71677 TCTATTACAAACACGTTCAAG-GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGC 71735 ||| ||| | | | ||| | | ||||| | ||||||||| |||| |||| || Sbjct 55184 TCT-TTAATGAAAGTTGGAAGACCTATTGATGCTAAATTACAAACAGCTATTTCATCAGG 55126 Query 71736 ATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTG 71795 | | || | ||||| | ||||||||| ||| || || | ||| | ||||| Sbjct 55125 CTTAGTTACTTCAACTATTTCTGCACAAAGATTAGAACATTTTATAGATCCAATATTTTT 55066 Query 71796 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAAT 71855 || ||| | | | ||||||| ||| ||||||| || || ||| |||| ||||| || Sbjct 55065 CTGGTTAGAATATCTATTACACGTATCTTTATAAATTATGAAAGGATTACCTGTTTCTAT 55006 Query 71856 CTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTA-TTATATTCTTGTATCTCT 71914 || | ||| || |||| |||||| | | |||| |||| | || ||| || Sbjct 55005 TTGTGTTTCAATTATCGTTTTCCAAAGATGTTGAGCTTTTACAGTTCTTATTGCCAATCC 54946 Query 71915 TTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTC--------GTCTCCCCAAGCATT 71966 ||| | ||| |||| | ||| | | | | ||||| || || || | Sbjct 54945 TTT-TGCTTCATATTCTTCATAAAGTTTTACAAACTCTTCATTGTGTTTCTCCCA----- 54892 Query 71967 GTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCG 72026 ||| |||| | || || | | | | |||||| ||| || || | |||| Sbjct 54891 ---TAAATCAGGTGCTGTATCCGCAGAAAAAAGTGACCAATCTTTATTTTCTTCGACTCT 54835 Query 72027 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTC 72086 |||||| || | ||| || | |||||| ||| ||||| |||||| ||||| || || Sbjct 54834 TTTCATGAATAAATCTGGTACCCAAAGTCCTAAAAATAAATCTCTTGTTCTTACTTCGTC 54775 Query 72087 GTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCA 72145 ||||| ||||||| | | || | || |||| || || |||||| ||||| | Sbjct 54774 TTTTCCAACATTCTTTCTTAATTCTA-AAAATTCATAGATTTCTACATGCCATGGTTCTA 54716 Query 72146 AGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGT 72205 ||||| ||||| | || || | || |||||||| |||| || || | | || | Sbjct 54715 TGTATACTGCCATTGCACCAGGTCTCTTTTTTCCTCCTTGATTTACATACTTTGTTGT-T 54657 Query 72206 TATTATAAACTCTCAA-CATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGA-- 72262 || || | | || ||| || | || || ||| ||| || | ||| Sbjct 54656 GCTTCAAATGTTTTAAGCATAGGTACAACTCCGAGTGATCTTCCA-----CCTGTAGATT 54602 Query 72263 -TATAG------CTTCCACTGGCAC-----GAATATTGCTAATTGATAGACCTATTCCCC 72310 ||| | ||| || ||| |||||| ||||| ||||||| | Sbjct 54601 TTATTGTAGATCCTTTTGCTCTCACATTATGAATAT---TAATTCCTAGACCT------C 54551 Query 72311 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTAT 72370 |||| ||||||| || | || || ||| | ||||| | || || |||||| || Sbjct 54550 CTGCACTTTTAGATATAAGAGCACAGTTTTTCACAGTATCGAATATACCTTCTATAGAAT 54491 Query 72371 CATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAA 72430 | || | || | | |||||||| | || ||| | | | ||||| | ||||| Sbjct 54490 CCTCTTTGATATCCAAAAGAAAACATGAACTCAATTGATTATTCTTTGTTCCGGAATTAA 54431 Query 72431 ATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAG 72490 | || ||||| | ||||| |||| |||||| ||||| || ||| ||||||| | | Sbjct 54430 ACAATGTAGGTGTTGCGTGAATAAAATATTTTTTAGACATTAAATTATACGTCTGTAACG 54371 Query 72491 CTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTC 72550 | ||||| || | ||| ||| ||| || |||||||| || | || ||| |||| Sbjct 54370 CATCATCTATTTCTTCATCATGAATTTCTAAGGCTACACGCATAAAAACATCCTGTGGTC 54311 Query 72551 TTTCA-ACGAT--CTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAAC 72607 ||||| || || || |||| |||| ||||| || ||| ||| ||||||||| | | Sbjct 54310 TTTCATACCATAAATTTTTAT---TTTTTAACAAATACGATCTTTGCAAAGTTTTCACCC 54254 Query 72608 CAAAATAGTTGTATGAAAAGTCTC 72631 ||||||| || | | ||| |||| Sbjct 54253 CAAAATAATTTAAAGTAAAATCTC 54230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671135928196400