Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887935.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq157 136 4e-27 seq290 100 3e-16 >seq157 Length=84007 Score = 136 bits (150), Expect = 4e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| ||||||| |||||||||||| || || |||||||| |||| ||| || ||||| Sbjct 52126 AACCAAATGAAGTGTAGATTCTTTCTGGATATTGTAATCACTCAATGTTCTACCATCTTC 52067 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 | ||||||||| ||| | |||| | ||| ||||| |||||||| ||||| ||||| Sbjct 52066 CAATTGTTTACCTGCAAATATCAATCTTTGTTGATCTGGAGGTATTCCTTCCTTGTCTTG 52007 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 |||||| ||| | | ||| | | ||| |||| ||| ||||| | || | ||||| Sbjct 52006 TATTTTTGCTTTGACATTTTCTATGGAGTCGGTGGATTCGACTTCTAGTGTGATTGTCTT 51947 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| || | ||||| || ||||| ||||| Sbjct 51946 GCCCGTAAGCGTTTTGACAAATATCTGCAT 51917 >seq290 Length=54858 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| | || |||||||| | |||||||| || ||||| || |||||||| Sbjct 33844 CCACCTCTTAATCTTAATACTAAATGCAACGTAGATTCCTTCTGTATATTATAATCGCTT 33903 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || || ||||| ||||| || ||| | |||| | || ||||| |||||| Sbjct 33904 AATGTTCTACCATCCTCGAGCTGTTTTCCTGCAAATATCAATCTCTGTTGATCTGGAGGT 33963 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || || || |||| | ||| | || || | ||||||| Sbjct 33964 ATTCCTTCTTTATCCTGTATCTTAGCCTTTACATTTTCTATAGTATCAGAATTTTCTACT 34023 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| ||| | || || || || | ||||| || || || |||||| Sbjct 34024 TCAAGAGTAATTGTTTTTCCTGTGAGAGTTTTAACAAAGATCTGCATA 34071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507011928304800