Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887935.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq290 152 4e-32 >seq290 Length=54858 Score = 152 bits (168), Expect = 4e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| |||||||| |||||||| | || || || || ||||| || ||||||||| Sbjct 33844 CCACCTCTTAATCTTAATACTAAATGCAACGTAGATTCCTTCTGTATATTATAATCGCTT 33903 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| | || || | ||||| || || ||||||| | ||||| || || Sbjct 33904 AATGTTCTACCATCCTCGAGCTGTTTTCCTGCAAATATCAATCTCTGTTGATCTGGAGGT 33963 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||||||||| || || || ||||||| ||||||| ||||| ||||||||| Sbjct 33964 ATTCCTTCTTTATCCTGTATCTTAGCCTTTACATTTTCTATAGTATCAGAATTTTCTACT 34023 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATAT 15365 || | ||||| ||||| ||||| |||||||| ||||| || ||||||| Sbjct 34024 TCAAGAGTAATTGTTTTTCCTGTGAGAGTTTTAACAAAGATCTGCATAT 34072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362177478516990