Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887935.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq24 221 3e-52 seq290 199 9e-46 seq157 196 1e-44 >seq24 Length=118493 Score = 221 bits (244), Expect = 3e-52 Identities = 579/873 (66%), Gaps = 24/873 (3%) Strand=Plus/Minus Query 268696 AGATAGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGC 268755 |||||||||||| | ||||||||| | | | | ||||||| | || || ||||| Sbjct 56605 AGATAGATTTGTTTTGTTTCCAATAAAATACGATCGTATATGGGATTTATATAAGCAGGC 56546 Query 268756 CGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAA 268815 || | || |||||||||| |||||||||||| | ||| |||| ||| |||||||| Sbjct 56545 ACTTTCATCGTTTTGGACTGCTGAAGAAGTAGATTTATCTAATGATTTAGACGATTGGAA 56486 Query 268816 AAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAG 268875 | | || || |||||| |||||| |||| | | || |||||||||| Sbjct 56485 TGGTCTTAATGATGATGAAAGACATTTTATAAGTTATGTGTTGGCATTTTTTGCAGCATC 56426 Query 268876 TGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAA--GAGGTACAGATTCCT 268933 ||||| || ||||| |||||||| |||| || || || || || || ||||| || Sbjct 56425 AGATGGGATTGTTAATGAAAATCTTTTAGAAAATTT-TG-CAGCGGAAGTTCAGATACCA 56368 Query 268934 GAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTAC 268993 ||||| |||||| |||| |||||||| ||| ||||||||||| ||||| ||||||||| Sbjct 56367 GAAGCTAGATGTGTTTATGGATTCCAAATAATGATAGAAAATATACATTCTGAGATGTAC 56308 Query 268994 AGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTT-- 269051 | ||||||| || ||||| || ||||| || || |||||| | ||| || Sbjct 56307 TCATTGCTAATAGAAAC--ATATATTAGAGAACAA-GAGAA-AAAAGATTTTTTATTTAA 56252 Query 269052 --CTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAA 269109 | || || || | | ||| ||| | || ||| || |||||||||||| Sbjct 56251 CGCAATTTCTACAATACCAACAATTAAAAATAAAGCAGACTGGACTATGAAATGGATAAC 56192 Query 269110 CGAT---AGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATT 269166 ||| | | || | ||| || |||| ||||| ||||||||||| || Sbjct 56191 GGATAAAAAATCATGTTTTGCTACAAGAATAATTGCATTTGCGTGCGTAGAAGGTATTTT 56132 Query 269167 CTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATT 269226 ||| || || |||||||| | || || ||| | || ||| | || | |||||||| | Sbjct 56131 CTTCTCTGGATCTTTTGCATCCATATTCTGGCTTAAAAAACGTGGATTAATGCCAGGTCT 56072 Query 269227 AACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTT 269286 |||||||| || ||||| || || || || ||||| | || || || || ||| | Sbjct 56071 TACTTTCTCCAATGAATTAATCAGTAGAGATGAAGGAGTGCATGTTGAATTTGCATGTCT 56012 Query 269287 ATTATTTACTAATTATCTTTCACACAAACCTTCTCAAGATAGAGTATACGAAA---TTAT 269343 ||| | || | | | | | ||| | | | || | |||| ||||| ||| Sbjct 56011 CTTAAATGCTCACT---TAGAAGAAAAAGCACCATATGAAACAGTAATCGAAATAGTTAA 55955 Query 269344 AGATTCAGCTGTTTCTGTAGAAACAGAATTTCTAACGGAAGCTCTATCTATCGATCTTAT 269403 ||| ||| || | | ||| ||||||| | | ||| |||| | | | | || Sbjct 55954 AGA---AGCAGTAGCAATTGAACAAGAATTTGTTTCTGAAAGTCTACCCGTAAGTTTAAT 55898 Query 269404 CGGTATGAATAGCAAATCGATGATAGAATATATTAAGTTCGTATCTGATAGATTGCTGGT 269463 || ||||| | ||||| ||| | || || | || || |||| | | | || Sbjct 55897 TGGAATGAACTGTAAATCTATGTGTAATTACATAGAATTTGTGGCTGACAATCTCTTAGT 55838 Query 269464 GTCTTTAGGGTTTAGTAAAAAATATAACGTTGAAAATCCGTTTAGTTTTATGGAGAATAT 269523 | |||| || |||| | || ||| ||||||||| ||| ||| ||||| ||||| Sbjct 55837 TGATCTAGGATTCTCTAAACATTACAACACTGAAAATCCATTTGATTTCATGGAAAATAT 55778 Query 269524 ATCATTAGAAGGTAAGGCTAATTTCTTCGAGAA 269556 ||| ||| |||| || | |||||||| || || Sbjct 55777 ATCTTTACAAGGAAAAACCAATTTCTTTGAAAA 55745 >seq290 Length=54858 Score = 199 bits (220), Expect = 9e-46 Identities = 187/237 (79%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 104323 TTTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATT 104382 |||| ||| || ||||||| || | ||||| ||| || |||||||| ||||| ||||| Sbjct 33836 TTTAATTA--CCACCTCTTAATCTTAATACTAAATGCAACGTAGATTCCTTCTGTATATT 33893 Query 104383 ATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTG 104442 ||| || || |||||||| || || || |||||||| ||||| || | |||||||| Sbjct 33894 ATAATCGCTTAATGTTCTACCATCCTCGAGCTGTTTTCCTGCAAATATCAATCTCTGTTG 33953 Query 104443 ATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCT 104502 ||| ||||||||||||||||||||||| ||||| || ||||||||||||| ||||| Sbjct 33954 ATCTGGAGGTATTCCTTCTTTATCCTGTATCTTAGCCTTTACATTTTCTATAGTATCAGA 34013 Query 104503 AGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | |||||| || || ||||| || || || || || ||||| ||||| |||||||| Sbjct 34014 ATTTTCTACTTCAAGAGTAATTGTTTTTCCTGTGAGAGTTTTAACAAAGATCTGCAT 34070 >seq157 Length=84007 Score = 196 bits (216), Expect = 1e-44 Identities = 186/238 (78%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 104323 TTTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATT 104382 ||| || |||| || || | ||||| || | ||| | ||||||||||||||| ||||| Sbjct 52153 TTTCTTCTTTCCTCCCCTCAATCTAAGAACCAAATGAAGTGTAGATTCTTTCTGGATATT 52094 Query 104383 ATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTG 104442 || ||| | |||||||| ||||| | |||||| || ||||| || | || ||||| Sbjct 52093 GTAATCACTCAATGTTCTACCATCTTCCAATTGTTTACCTGCAAATATCAATCTTTGTTG 52034 Query 104443 ATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCT 104502 ||| |||||||||||||| || || || || |||||||| |||||||||| || ||| | Sbjct 52033 ATCTGGAGGTATTCCTTCCTTGTCTTGTATTTTTGCTTTGACATTTTCTATGGAGTCGGT 51974 Query 104503 AGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 | ||| || |||||||| || ||||| || ||||| ||||| ||||||||||||||| Sbjct 51973 GGATTCGACTTCTAGTGTGATTGTCTTGCCCGTAAGCGTTTTGACAAATATCTGCATT 51916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151392646606120