Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887935.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq290 134 5e-26 seq157 129 2e-24 seq370 118 4e-21 seq246 116 1e-20 seq24 111 6e-19 seq326 89.7 2e-12 >seq290 Length=54858 Score = 134 bits (148), Expect = 5e-26 Identities = 168/229 (73%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 391045 TTATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAAT 391104 ||||| || | || || |||||||| || || || ||||| ||||||||||| || ||| Sbjct 34074 TTATA-TGCAGATCTTTGTTAAAACTCTCACAGGAAAAACAATTACTCTTGAAGTAGAAA 34016 Query 391105 CATCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTG 391164 ||||||| || ||| | | || || || || ||||| |||||||| ||||| | Sbjct 34015 ATTCTGATACTATAGAAAATGTAAAGGCTAAGATACAGGATAAAGAAGGAATACCTCCAG 33956 Query 391165 ATCAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATT 391224 ||||||| | || || || |||| ||||| || || ||||| ||||| || |||| Sbjct 33955 ATCAACAGAGATTGATATTTGCAGGAAAACAGCTCGAGGATGGTAGAACATTAAGCGATT 33896 Query 391225 ATAATATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 ||||||| | ||||| | || | || |||||||||||| | ||||| Sbjct 33895 ATAATATACAGAAGGAATCTACGTTGCATTTAGTATTAAGATTAAGAGG 33847 >seq157 Length=84007 Score = 129 bits (142), Expect = 2e-24 Identities = 164/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || ||||| || || || || || || || || || || ||||| | Sbjct 51916 AATGCAGATATTTGTCAAAACGCTTACGGGCAAGACAATCACACTAGAAGTCGAATCCAC 51975 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || ||| ||| | | ||| |||||| ||||| ||||||||||| ||||| ||||| Sbjct 51976 CGACTCCATAGAAAATGTCAAAGCAAAAATACAAGACAAGGAAGGAATACCTCCAGATCA 52035 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 |||| | || || || |||| |||||| | |||||||| ||||| ||| ||||| || Sbjct 52036 ACAAAGATTGATATTTGCAGGTAAACAATTGGAAGATGGTAGAACATTGAGTGATTACAA 52095 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 ||| | || || | |||||||| || || | ||| |||| ||| Sbjct 52096 TATCCAGAAAGAATCTACACTTCATTTGGTTCTTAGATTGAGGGGA 52141 >seq370 Length=149473 Score = 118 bits (130), Expect = 4e-21 Identities = 264/389 (68%), Gaps = 8/389 (2%) Strand=Plus/Plus Query 502351 AAATGAAAAAATATGGAACTAGAAACAGTTTGCTTACAGCACTAATGCCAACAGCATCTA 502410 |||| ||||| ||||| |||||| || || || | ||||| |||||||||| Sbjct 55571 AAATCAAAAAGCATGGAGTTAGAAATTCATTATTTGTTGCTGTTATGCCTACAGCATCTA 55630 Query 502411 CATCTCAACTATTAGGCAATTATGAATCATTTGAACCATTTACTTCTAATATATATACTA 502470 |||| ||| | || || | |||||| | ||||| || ||||| ||||| ||||| | Sbjct 55631 CATCCCAAATTTTGGGTTTTAATGAATGTATAGAACCTTTAACTTCAAATATTTATACCA 55690 Query 502471 GAAGAACTTTAGCAGGTGAATTTATAGTTGTTAATAAACATTTAATAAATGATTTGAATG 502530 ||||||||||||| || || ||| |||||| ||| ||||||| || ||||| | | Sbjct 55691 GAAGAACTTTAGCTGGAGATTTTCAAGTTGTAAATTCTTATTTAATTAAAGATTT-ACTA 55749 Query 502531 AAA-TCGGTGAATGGACTAATGAAATTAGACAAAAAGTAATTAATGATAATGGTTCTATT 502589 ||| | | |||| ||| ||||| | | | |||| || | | |||||||||| Sbjct 55750 AAACTTAATCTCTGGAATAAAGAAATAAAAAACCTAGTAGTTCAGAACGATGGTTCTATC 55809 Query 502590 CAAAATATATTA---CTACCTAATATAATTAAAAACATCTATCAAACTTCATATGAAATG 502646 ||| ||||| | |||| || ||||||| | | ||| ||| ||| ||| | Sbjct 55810 CAAGATATAGAAGCTATACCAAAAGAAATTAAATATTTGTATAGAACAGCATGGGAATTA 55869 Query 502647 AAACAAAAATATATAATAGATGGATGTTCT-ATACGGGGAGCTTATATAGATCAAACCCA 502705 ||| |||| ||| ||||| | | || ||| | | | ||| | |||||| | || Sbjct 55870 AAAATGAAATCTATTTTAGATTTAGCTGCTGATA-GAACACCATATGTTGATCAATCACA 55928 Query 502706 ATCTATGAATCTTTATTTTGC-ACAACCA 502733 |||| | ||| ||| | | || ||| ||| Sbjct 55929 ATCTCTTAATATTTTTATAGCTACACCCA 55957 Score = 107 bits (118), Expect = 8e-18 Identities = 306/475 (64%), Gaps = 0/475 (0%) Strand=Plus/Plus Query 501073 TAGAACCTCATCATGCGGATATATTTGATTTTTTGGAACTACGAAAAAATACTGGTGCCG 501132 ||||||| |||| || || | ||| ||||| ||| || |||| ||| ||| | Sbjct 54716 TAGAACCATGGCATGTAGAAATCTATGAATTTTTAGAATTAAGAAAGAATGTTGGAAAAG 54775 Query 501133 AATCAGAAAGAGCCCGTGATTTATTTTTAGCATTATGGGTTTCTGACTTATTTATGAATC 501192 | || |||| | | ||||||||||||| | | ||||| | || ||||| ||||| Sbjct 54776 ACGAAGTAAGAACAAGAGATTTATTTTTAGGACTTTGGGTACCAGATTTATTCATGAAAA 54835 Query 501193 AGGTTAAATTAAATAATGATTGGTATTTATTTTGTCCAGACAAAGCACCAGGATTAAATG 501252 || || |||||| ||||||| | |||| | | || | |||||| | ||| | Sbjct 54836 GAGTCGAAGAAAATAAAGATTGGTCACTTTTTTCTGCGGATACAGCACCTGATTTATGGG 54895 Query 501253 ATGTATATGGAGATGAATATGAAACTCTTTATTGGAAATATGTATCAGAAGAAAAATNNN 501312 | | | || || | || || |||||| |||||| | || ||| | Sbjct 54896 AGAAACACAATGAAGAGTTTGTAAAACTTTATGAAGAATATGAAGCAAAAGGATTGGCAA 54955 Query 501313 NNNNNNNNNNNAAAGCCCGGAAATTATGGGAAGCTATAATGACAGCACAGTTTGAAACTG 501372 ||||| | | | ||| || | ||||| | |||| | ||||| | Sbjct 54956 TAAGAACTGTAAAAGCTCAACATCTTTGGAAAACGATAATTGAAACACAAATAGAAACAG 55015 Query 501373 GTTCACCCtatatgttatataaagataatattaataaaaaatcaaaccagaaaaatatag 501432 || || | || | |||||||||| ||||| | | || |||||||||||||| | Sbjct 55016 GTAATCCTTTCATAATTTATAAAGATACGTGTAATAGATATTCTAACCAGAAAAATATTG 55075 Query 501433 gaataatTAGAAGTTCAAATTTATGTGCTGAAATTGTAGAATATTCAGATTCTACTGAAA 501492 || || | | |||| ||| | ||||| ||||| || ||| | | || ||||| Sbjct 55076 GATCTATAAAATGTTCTAATCTTTGTGCAGAAATAGTTGAAGTAACTAAGCCTGATGAAA 55135 Query 501493 CAGCTGCTTGTAATTTAGCTTCAATTGCTCTACCAAATTTTATTAAATCTAAAAA 501547 ||||| |||||||||||| ||||| | ||| |||| ||| |||||| ||| || Sbjct 55136 TAGCTGTTTGTAATTTAGCATCAATAGGTCTTCCAACTTTCATTAAAGATAACAA 55190 Score = 102 bits (112), Expect = 3e-16 Identities = 263/396 (66%), Gaps = 21/396 (5%) Strand=Plus/Plus Query 499575 ATTGATTATAACCGTGATTATTCATTTGAtttttttGGTATTAAAACAATGGAAAGAACC 499634 || |||||||| | |||| | | || ||| |||||| | ||||| || ||||| | Sbjct 54217 ATAGATTATAAGAGAGATTTTACTTTAAATTATTTTGGGGTGAAAACTTTGCAAAGATCG 54276 Query 499635 TATAT-------AACAAAACTAGATGGTCACTTAATTGAAAGACCTCAAGATGTGTTCAT 499687 ||| | || |||| | ||||| ||||||||| || ||||| || || Sbjct 54277 TATTTGTTAAAAAATAAAAATTTATGGTA-------TGAAAGACCACAGGATGTTTTTAT 54329 Query 499688 GCGAGTAGCATCTCTTGTACATTGTGGTGATTTACAAAAAACAATAGATTCATATAATTT 499747 ||| ||||| | | ||| || || || | | | || | | |||||||| Sbjct 54330 GCGTGTAGCCTTAGAAATTCATGATGAAGAAATAGATGATGCGTTACAGACGTATAATTT 54389 Query 499748 AATGTCaaaaaaaTATTTTACTCATGCTAGTCCTACATTATTTAATGCAGGAA-ATAAAA 499806 |||||| ||||||||||||| ||| || | |||||||| |||||| | |||| | | || Sbjct 54390 AATGTCTAAAAAATATTTTATTCACGCAACACCTACATTGTTTAATTCCGGAACAAAGAA 54449 Query 499807 AAGGTAATTTAGTATCTTGTTTCCTTTTAGGT---ACAGAAGATTCCATGACAGGTAT-T 499862 | |||| ||| || ||||| ||||| | | | ||| ||||| || |||||| | Sbjct 54450 TAATCAATTGAGT-TCATGTTTTCTTTTGGATATCAAAGAGGATTCTATAGAAGGTATAT 54508 Query 499863 TCAAAAACTTGGAATGATGTAGCTCATATCTCAAAATGGGGTGGTGGAATTGGTATTCAT 499922 || | | || || ||| |||| ||| || ||| | | || || | || ||| || Sbjct 54509 TCGATACTGTGAAAAACTGT-GCTCTTATATCTAAAAGTGCAGGAGGTCTAGGAATTAAT 54567 Query 499923 ATTTCAAATGTTCGTGCAAAAGGTTCTGAAATTAAA 499958 ||| ||||| | |||||||| ||| ||| ||| Sbjct 54568 ATTCATAATGTGAGAGCAAAAGGATCTACAATAAAA 54603 >seq246 Length=60991 Score = 116 bits (128), Expect = 1e-20 Identities = 266/394 (68%), Gaps = 21/394 (5%) Strand=Plus/Plus Query 361421 AGAACATATATTATTACGTCCTGGGATGTATATTGGGTCTGTAAGTAAAAATACTGAGCC 361480 ||| ||||||||||| ||||||| | ||||| ||||| ||| || | ||| Sbjct 10530 AGAGCATATATTATTGCGTCCTGATACTTATATAGGGTCGGTAG---AATGTGAGGAGAA 10586 Query 361481 CA-TGTGGTTATATGAA--GATAATAAGATGCaaaaaaaaGATATAACTTTTATACCTGG 361537 | | || ||| | | |||||||| || || ||| |||| |||||| | ||||| Sbjct 10587 GAATATGTATATTTTATCCGATAATAAAATTGTAAGTAAAAATATTACTTTTGTTCCTGG 10646 Query 361538 TCTTTATAAAATTTATGATGAAATTATTGTAAATGCACGTGATCATAGTATTAATGATAA 361597 | | |||||||| | ||||||||| ||||| |||||| ||| ||| || | |||| Sbjct 10647 TTTATATAAAATATTTGATGAAATAATTGTTAATGCAGCAGATAATAAAATAAGAGATAG 10706 Query 361598 AAGTTGTAATTCTATTGAGATTGAAGTAAATACTGATGA--AGGATATTTT----TCAGT 361651 | || | |||| ||| |||| ||| |||||| || || | | || || Sbjct 10707 TA-----AAATGAATTGT-ATTAAAGTGGATATTGATGAGAAGAATGGTGTCATATCTGT 10760 Query 361652 TTATAATAATGGTGATGAAGGAATTCCAGTCAAAGAACATGAAACACATAAAACACTTAT 361711 |||||||||||| |||| | || || || ||| ||||| || | |||| | | | Sbjct 10761 TTATAATAATGGAGATG---GTATACCTGTGAAAATACATGCAAAGGAGAAAATATATGT 10817 Query 361712 TCCTAGTATGATCTTTGGAGAATTACTAACTAGTTCAAATTATGATGATTCTaaaaaaaG 361771 |||| |||| ||||| | || |||| ||||| |||||||||||| | | || | Sbjct 10818 TCCTGAATTGATTTTTGGGCAGTTGTTAACCAGTTCTAATTATGATGATGATGAGAAGAA 10877 Query 361772 AACTACAGGCGGAATGAATGGATTAGGTTCTAAA 361805 ||| || |||| ||||||| ||| ||||| Sbjct 10878 GGTTACTGGTGGAAGAAATGGATATGGTGCTAAA 10911 Score = 105 bits (116), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 363757 TAGAAGATGCTAATAAAGCAGGAACAAAAGATGCTCATAAATGTGGATTATATTTAGCAG 363816 ||||||||||||| | ||||||||| ||| || | ||||| ||| |||| ||| Sbjct 11714 TAGAAGATGCTAACAGAGCAGGAACTGTTGATTCTTACAAATGCTCTTTAATTTTAACAG 11773 Query 363817 AGGGAGATTCTGCTCTTTCTATGATTCTGTCAGGGTTA--TCAAGTAAAGATAGAAATTT 363874 | |||||||| ||| | | || ||||||| || || || || | | || Sbjct 11774 AAGGAGATTCAGCTAAGACATTTGTTATGTCAGGTATAGGTCTTGT--AGGAAAAGATCA 11831 Query 363875 TTATGGTGCCTTTCCGTTAAAAGGAAAATTATTAAATGTAAGAGAAGCATCAGTTAAACA 363934 |||||||| ||||| || ||||| ||| | ||||||||| ||||||| || ||||| Sbjct 11832 TTATGGTGTATTTCCTTTGAAAGGTAAACTTTTAAATGTACGAGAAGCTTCTCACAAACA 11891 Query 363935 AATTATGGGAAATGATGAGATATCAAACCTTaaaaaaaTTTTAGGATTA 363983 ||||||| |||| | || | ||| |||||||||| |||||||| Sbjct 11892 GATTATGGAAAATAAAGAATTGATAAATATTAAAAAAATAATAGGATTA 11940 >seq24 Length=118493 Score = 111 bits (122), Expect = 6e-19 Identities = 555/859 (65%), Gaps = 35/859 (4%) Strand=Plus/Minus Query 496953 TTTCCTATTAAATATCATAAAATCTGGGATTTATATaaaaaaaTGGAA---GCAGCTTTT 497009 ||||| || ||||| || || |||||||||||||| | || | || | ||| Sbjct 56589 TTTCCAATAAAATACGATCGTATATGGGATTTATATAAGCA---GGCACTTTCATCGTTT 56533 Query 497010 TGGACAGCTGAAGAAATAGATTGGTCTAAAGATAAACATGATTTTAAAAAATTAAATCAA 497069 ||||| ||||||||| |||||| ||||| ||| | | |||| || | ||| | Sbjct 56532 TGGACTGCTGAAGAAGTAGATTTATCTAATGATTTAGACGATTGGAATGGTCTTAATGAT 56473 Query 497070 GATGAACAACGATTTATTAAATATGTATTAGCAtttttttCGGCAAGTGATACAATTGTA 497129 |||||| || ||||| | ||||| || ||||||||| | ||| ||| ||||| Sbjct 56472 GATGAAAGACATTTTATAAGTTATGTGTTGGCATTTTTTGCAGCATCAGATGGGATTGTT 56413 Query 497130 AATATTAATTTAGGAGAAAGATTATCTCATGAAGTTCAACCACTTGAAGCCAAAATTGCT 497189 ||| ||| | ||||| || | |||||||| || ||||| | | || | Sbjct 56412 AATGAAAATCTTTTAGAAAATTTTGCAGCGGAAGTTCAGATACCAGAAGCTAGATGTGTT 56353 Query 497190 TATACTTTTCAAATGATGATGGAAGGGATCCATAGTGAAGTATATGCACTTCAAATAGAT 497249 ||| || ||||| ||||| ||| || ||| ||| | || || | | |||||| Sbjct 56352 TATGGATTCCAAATAATGATAGAAAATATACATTCTGAGATGTACTCATTGCTAATAGAA 56293 Query 497250 A-ATATAATAGAAGATGTTCAAGAGAGAAAAGATATTTTA---AATTCAATAGAAACTGT 497305 | ||||| |||| | ||||||| ||||||| ||||| || |||| || | Sbjct 56292 ACATATATTAGA----GAACAAGAGAAAAAAGATTTTTTATTTAACGCAATTTCTACAAT 56237 Query 497306 ACCCTGTATTAAAGCAAAAACTGATTGGATGTTAAAATGGGTTAAATCTGAAGA---AAG 497362 ||| |||||| ||| | || |||| | |||||| | | | || | | | Sbjct 56236 ACCAACAATTAAAAATAAAGCAGACTGGACTATGAAATGGATAACGGATAAAAAATCATG 56177 Query 497363 TTTTGCAACAAGAATGGTGGCACAAGTAATTTCTGAAGGATTAttttttagtggaagttt 497422 |||||| |||||||| | ||| | ||||| | || || |||| ||| Sbjct 56176 TTTTGCTACAAGAATAATTGCATTTGCGTGCGTAGAAGGTATTTTCTTCTCTGGATCTTT 56117 Query 497423 ttgtgctattttttGG-TTaaaaaataaaaaTATAATGCCTGGT-TTAATCTCATCAAAT 497480 | | || || ||| |||||||| || ||||||| ||| ||| | || || ||| Sbjct 56116 TGCATCCATATTCTGGCTTAAAAAACGTGGAT-TAATGCCAGGTCTTACTTTC-TCCAAT 56059 Query 497481 GAATTAATTGCACGGGATGAAGGAATGCATTGTGATTATAGTAT-TATGTTATAT-CACA 497538 |||||||| | ||||||||| ||||| ||| | | | || | | ||| || | || Sbjct 56058 GAATTAATCAGTAGAGATGAAGGAGTGCATGTTGAAT-TTGCATGTCTCTTAAATGCTCA 56000 Query 497539 TGCTTCAAAATAAACTGTCACAAGA--AAAAATTCAAC-AAATGTTTAAAGATGCAGTGG 497595 ||| | || ||| | ||| | | ||| | | | | |||| ||||||| ||||| | Sbjct 55999 --CTT-AGAAGAAAAAG-CACCATATGAAACAGTAATCGAAATAGTTAAAGAAGCAGTAG 55944 Query 497596 AAACAGAAAGAATATTTATTTGTGAAAGCTTACCATGCTCCTTATTAGGAATGAA-TGCG 497654 || ||| | |||| ||| |||||| |||| ||| | |||||||| || Sbjct 55943 CAATTGAACAAGAATTTGTTTCTGAAAGTCTACCCGTAAGTTTAATTGGAATGAACTGTA 55884 Query 497655 GACCTAATGGAACAATACATTAAATTTGTGGCTGACCAATTAATTA-TTAAATTAGGATA 497713 | || ||| | ||||| ||||||||||||| |||| ||| || | |||||| Sbjct 55883 AATCT-ATGTGTAATTACATAGAATTTGTGGCTGA-CAATCTCTTAGTTGATCTAGGATT 55826 Query 497714 TAATAAAATATTTAAAGTAGATAATCCATTTACATGGATGGAAGCAATTTCAATTGAAGG 497773 |||| | || || ||||||||| | |||||| || || | |||| Sbjct 55825 CTCTAAACATTACAACACTGAAAATCCATTTGATTTCATGGAAAATATATCTTTACAAGG 55766 Query 497774 TAAAACTAATTTCTTTGAA 497792 ||||| |||||||||||| Sbjct 55765 AAAAACCAATTTCTTTGAA 55747 >seq326 Length=233589 Score = 89.7 bits (98), Expect = 2e-12 Identities = 175/258 (68%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 96068 GGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAAGGATAAAAGTACTTTACTAATG 96127 ||||| | |||||| | ||| |||||| ||| ||||| | || || | || Sbjct 208061 GGATCTTTAGGATTGGCATCATGTAATAAAGATGATATAGATAATAACACCTTTCCAACT 208120 Query 96128 TTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAACAAATTGCACCTGTAGTACTA 96187 | | ||| || ||||| | |||||||||||||||||||| ||| ||| | | Sbjct 208121 GTGAGTGCAGGACTCCATTCGTTTTTTAAAATATCTAAACATATTTGACC---ATCCTTT 208177 Query 96188 ATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTAGGAGGCTTATATGGATAGTCT 96247 ||||| ||||||||| ||||| ||| | | |||||| || | | ||||||| | Sbjct 208178 ATATTACAATGATAAATTCTTGTTTTGAATGTCACTTTAGGTGGATGAAATGGATAATTA 208237 Query 96248 TCAGGAAAAGTAATTTCTAATTGGAATACTCCACCCTCATAGGGTGTTCCTGAAGGGCCA 96307 | || | |||| |||||||| |||| |||| | | ||| ||||| || | ||| || Sbjct 208238 GCTGGGAGTATAATCTCTAATTGAAATATTCCATCTTGATATGGTGTGCCAGGAGGACCT 208297 Query 96308 ACTAAAGTTCCATCCCAT 96325 | | ||| | |||||| Sbjct 208298 ATAATAGTGGCTTCCCAT 208315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975708527582120