Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887935.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq246 174 1e-37 seq24 165 6e-35 seq367 143 2e-28 seq46 116 3e-20 seq168 111 1e-18 seq328 105 5e-17 >seq246 Length=60991 Score = 174 bits (192), Expect = 1e-37 Identities = 245/344 (71%), Gaps = 0/344 (0%) Strand=Plus/Plus Query 635393 GAAAAATTATATAATGCTCACAAGGCAGGAACCAAAGAAGGATATAAATGTACCCTAATT 635452 ||||| ||| | ||||| ||| |||||||| || || ||||| | ||||| Sbjct 11707 GAAAAGTTAGAAGATGCTAACAGAGCAGGAACTGTTGATTCTTACAAATGCTCTTTAATT 11766 Query 635453 TTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAATGTTATTGGAAGA 635512 || ||||| |||||||||||||| ||||| | |||||| ||| | | || | |||| | Sbjct 11767 TTAACAGAAGGAGATTCAGCTAAGACATTTGTTATGTCAGGTATAGGTCTTGTAGGAAAA 11826 Query 635513 GATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGGGATGCTAGTCCT 635572 ||| ||||||| || || || | | ||| |||||||| ||||| | || ||| || Sbjct 11827 GATCATTATGGTGTATTTCCTTTGAAAGGTAAACTTTTAAATGTACGAGAAGCTTCTCAC 11886 Query 635573 aaaaaaaTTGCTGATAATGAGGAAATTACAGCAATCaaaaaaaTTGTTGGACTTGAACAA 635632 ||| | ||| || ||| | ||| | | | || |||||||| | ||| | ||||| Sbjct 11887 AAACAGATTATGGAAAATAAAGAATTGATAAATATTAAAAAAATAATAGGATTAAAACAA 11946 Query 635633 GGAAAAGTTTATGATGATCTCAAAGGTTTACGATATGGTAGTATTATGATTCTTGCTGAT 635692 || |||| || | ||| | |||| |||| ||||||| |||||| ||| | | ||| Sbjct 11947 GGTAAAGAATACAAAGATGTAAAAGATTTAAGATATGGGCATATTATAATTATGACGGAT 12006 Query 635693 CAAGATGTTGATGGGTACCATATCAAAGGATTAATCATGAATTT 635736 |||||| |||||| | ||||||||||||||| | || ||||| Sbjct 12007 CAAGATCATGATGGTTCCCATATCAAAGGATTGTTGATTAATTT 12050 >seq24 Length=118493 Score = 165 bits (182), Expect = 6e-35 Identities = 546/826 (66%), Gaps = 66/826 (8%) Strand=Plus/Plus Query 396904 TTTCTCAAAGAAATTGGCTTTGACAA--AAACGTCGAtttttttCATGTATTCGAATGGA 396961 ||| ||||||||||||| ||| | ||| | || |||| |||| | || |||||| Sbjct 55744 TTTTTCAAAGAAATTGGTTTTTCCTTGTAAAGAT--ATATTTTCCATGAAATCAAATGGA 55801 Query 396962 TTATCAACATTG-AATTTTTTGCGATAACCAAGATCTAC-AAGTAATCTGTCAGCAACAT 397019 || ||| ||| ||| ||| | || | || ||||| || ||| || ||||||| ||| Sbjct 55802 TTTTCAGTGTTGTAATGTTTAGAGA-ATCCTAGATCAACTAAGAGAT-TGTCAGCCACAA 55859 Query 397020 ATTTAATATATTGAGACATTAGTTCAGAATTCATACCAAG-AAGTTTACACGGAAGAGAA 397078 ||| || || | | |||| || | | ||||| |||| || |||| || ||| Sbjct 55860 ATTCTATGTAATTACACATAGATTTACAGTTCATTCCAATTAAACTTACG-GGTAGACTT 55918 Query 397079 TCATTAATAAATTCTTCTTCAATTTCAATCGCTTCGTCAATAATTTGGTAAACAACAGAT 397138 ||| || |||||||| ||||||| | | ||||| | || |||| | || Sbjct 55919 TCAGAAACAAATTCTTGTTCAATTGCTACTGCTTCTTTAACTATTTCGATTAC------- 55971 Query 397139 TCTTTCAAACGAT---TATTCAACAA--TGAATACATAATA--CAAGCAAGTTCTACATG 397191 | ||||| | | | | ||| | | ||| | ||| | || |||| ||| ||||| Sbjct 55972 TGTTTCATATGGTGCTTTTTCTTCTAAGTGAGCATTTAAGAGACATGCAAATTCAACATG 56031 Query 397192 TTTGTTTTCATCACGAGCAATAAATTGATTTGATATAATTAGACCAGGCATTACATGCAT 397251 |||||| | | || |||| ||| || | | | ||||| ||||||| || || Sbjct 56032 CACTCCTTCATCTCTACTGATTAATTCATTGGAGAAAGTAAGACCTGGCATTA-ATCCAC 56090 Query 397252 TTCTCTAGTTTTTAA-CCAGAAAATCGAAGCAAATGATCCACTAAAGAAAACGCCTTCTA 397310 | ||||||| |||||| || || ||||| |||||| ||||||| ||||||| Sbjct 56091 GT------TTTTTAAGCCAGAATATGGATGCAAAAGATCCAGAGAAGAAAATACCTTCTA 56144 Query 397311 CAATAGAGAATGCTACTAAT-TTGTGAGCATAAG------TCTTATCAGATTTAATCCAT 397363 | | ||||| | || | |||| |||| || | ||||| | | |||||| Sbjct 56145 CGCACGCAAATGCAATTATTCTTGT-AGCAAAACATGATTTTTTATCCGTT---ATCCAT 56200 Query 397364 TTATTACACCAATCAGCTTTCTTTTTAATACTTGGCATAGTTTTAATAG-----AATTAA 397418 || || ||| || ||||| |||||||| |||| || || ||| | ||| || Sbjct 56201 TTCATAGTCCAGTCTGCTTTATTTTTAATTGTTGGTATTGTAGAAATTGCGTTAAATAAA 56260 Query 397419 TGAGTTTATTTCTCAAAGCATCATCTTTAACAAATGTAGTCAACATTAG---TGAATACA 397475 | || |||||| | ||| ||| | |||| || | |||| ||| |||| Sbjct 56261 AAATCTTTTTTCTCT-----TGTTCTCTAATATATGTT-TCTA--TTAGCAATGAGTACA 56312 Query 397476 TTTCTCCATGAGCATTTTCCATTGCATA--TTGGAAACCATAAGCACATTCAGCTTCTTT 397533 | || ||| |||||| || ||| |||||| |||||| ||||| ||||||| Sbjct 56313 TCTCAGAATGTATATTTTCTAT--CATTATTTGGAATCCATAAACACATCTAGCTTCTGG 56370 Query 397534 TATTTTCACAACATCAATAAGATTTTCTTTAATATTAGCATTAACAATACCATCAGCTGC 397593 ||| | || | | || ||||||| || ||| |||||||||| ||||| | ||| Sbjct 56371 TATCTGAACTTCCGCTGCAAAATTTTCTAAAAGATTTTCATTAACAATCCCATCTGATGC 56430 Query 397594 CGCAAAAAATGCCAATACGTGCATAATAAAATTTCTATCATCATCGCTCAAATGATTATT 397653 |||||||||||||| || | | ||||||| ||| |||||||| | | || ||| Sbjct 56431 TGCAAAAAATGCCAACACATAACTTATAAAATGTCTTTCATCATCATT---AAGACCATT 56487 Query 397654 CCAATCATTCACATCTTTTGCCAAATCCACTTCTTCAACTGTCCAA 397699 |||||| | | ||| || | ||||| ||||||||| | |||||| Sbjct 56488 CCAATCGTCTAAATCATTAGATAAATCTACTTCTTCAGCAGTCCAA 56533 >seq367 Length=8762 Score = 143 bits (158), Expect = 2e-28 Identities = 343/514 (67%), Gaps = 10/514 (2%) Strand=Plus/Minus Query 303736 AGTCCACCATCTCTTGATCTACCTTCTGGCGCTTGTCTTGTAAGTAACTGTGTTGGTCCA 303795 || || ||||||||| |||||||||| | |||||||||||||| ||| ||||| Sbjct 8178 AGACCTCCATCTCTTCCTCTACCTTCTAATGGTTGTCTTGTAAGTATTTGTACAGGTCCT 8119 Query 303796 CGAGCGCGTGAGTGGGCCTTGTCGCCTACCATTTGTTTCAATCTCTGATAATATGTCGGA 303855 ||| |||| ||| || || ||||||| || || | ||| || |||||||| ||| Sbjct 8118 TTAGCACGTGCATGGATTTTATCTTCTACCATATGCTTTAGTCTTTGGTAATATGTAGGA 8059 Query 303856 CCAATAAAAATTTTAACTGGTAATTTTTTACCATTCATTCCATTATACATAGTTTCATTA 303915 || | ||| ||||| || | | |||| ||||| |||||||||| |||||| ||| | Sbjct 8058 CCTACAAATATTTTTGCTTGGAGTTTTCTACCAGTCATTCCATTGTACATAACTTCTACA 7999 Query 303916 CCCCATTCTTCATAACCAGCAGCAACTAATTCATCGTTAATGGCATTAAGATCAACACTT 303975 || | || | | ||| | ||||| || || ||| | ||| | Sbjct 7998 CCTCTTTTATGGAATCCATAGGATTTTAATTTCTCTGATATTTCATCTACTGTTACATCT 7939 Query 303976 GTAAATGGTGTTGCATCGCCATACACTCCTTTAACTGCACATAGTTTTCCTAATAAACAT 304035 | |||||||| |||| || | |||| | | |||| || |||||||||||||||| Sbjct 7938 GAGAATGGTGTACCATCACCCTCTTCTCCACTGAGAGCACTTACTTTTCCTAATAAACAT 7879 Query 304036 TCAATAAGTTGCCCAATAGTCATACGT-TTGGGCATACAATTAGGATTGATAATAATATC 304094 || || | || ||||| | ||| | | ||| || | || || || ||||| | ||| Sbjct 7878 TCTATTAAATGTCCAATGGACATTCTTGATGGAAATGC-ATGTGGGTTCATAATCACATC 7820 Query 304095 GGGAATTAATCCAGATTTACTGAATAACATATCTGCTCGATGAGCTT--TGT--ATCCAA 304150 || || ||||| ||| | ||| ||| ||| || | ||| ||| ||| | Sbjct 7819 TGGTATCAATCCTTCTTTGGTAAATGGCATTTCTTCTTG----TCTTAATGTCATTCCTA 7764 Query 304151 TGGTACCTTTTTGACCTGCTCTTGACGAAAATTTATCACCTACATTGGGAATTCTCTCTG 304210 |||||||||| || || || || | ||||||||| |||| | || ||||| || Sbjct 7763 TGGTACCTTTCTGTCCATGTCGAGAAGCAAATTTATCTCCTATTTGAGGTATTCTGCATG 7704 Query 304211 ATCGAATTCTCATTTTAATAATTGGATACCCGTC 304244 |||| | | | ||||| ||| | ||| || || Sbjct 7703 ATCGTACTTTTATTTTGGTAAATTTATATCCCTC 7670 >seq46 Length=104894 Score = 116 bits (128), Expect = 3e-20 Identities = 383/581 (66%), Gaps = 31/581 (5%) Strand=Plus/Plus Query 366549 AATTGCCATAGATGAAGCTCATTGTATTAGTGCATACGGATTTGATTTTAGGACTGCTTA 366608 ||||| || |||||||| |||||| | ||| || || ||||||||||| ||| ||| Sbjct 88169 AATTGTGATTGATGAAGCACATTGTGTCAGTCAATGGGGTTTTGATTTTAGACCTGATTA 88228 Query 366609 TAGAGAGATT---ACATTTT-TCAAAGAAATTTTACCCAATGTTCCAATATTAGCATTAA 366664 | | ||| | || | | | |||||| |||| | || || |||| |||| Sbjct 88229 TGTCCA-ATTGGCAGATAATCTTAGAGAAAT------CAATATACCTGTAATAGCTTTAA 88281 Query 366665 CTGCGACAGCAACTAATATTGTTGCCAAAGATATTTGTAAAGTTTTGCAATTAAAAACTA 366724 | || || |||| | | ||| | ||||||||| ||| ||| ||| ||| | | Sbjct 88282 CAGCCACTGCAAACAGTCGTGTAGAAAAAGATATT-GTAGGATTTCTCAA---AAATCCA 88337 Query 366725 ATGAACCTATCAAGGCCTCTTTCGATCGACCCAACTTATATTTAGAGGTACGAACAAAGA 366784 | || |||| | | |||| || || || || | | || ||| || ||||| Sbjct 88338 AA-AATCTATAGAAGTAG-TTTCAATAGAAAAAATATAAAATATGAAGTAAGAGAAAAGA 88395 Query 366785 GTAAAAATCCTGCAAATGATATTGTCCCAATTATCAATA---AATATCCAAATCAATCC- 366840 |||||| || | ||||||| || |||| ||| | ||||||||| ||| Sbjct 88396 ATAAAAACACTCTTATAAATATTGTATCATTTATAAATGCCTATTATCCAAAT---TCCA 88452 Query 366841 --GTTATTATTTATTGTTTGACCAAGAAAGAGACACAAAAAATAGCTGATATATTGACTG 366898 | ||||||||||||| || |||||||| || |||| | |||| |||| | Sbjct 88453 GAGGTATTATTTATTGTACAACAAAGAAAGAATGTGAAGAAATCACAGATAAATTGCAAG 88512 Query 366899 TTCATAAAGTT-GTTTGTGGTATCTATCATGCAGGTTTATCAAACGAACACAAAACAAAA 366957 | ||||| | || ||| | |||||| || |||||| || ||| || || Sbjct 88513 ATTATAAAATCAGTGCAAAATATTT-TCATGCTGGATTATCACCTAAAGACAGAAGGAAT 88571 Query 366958 ACTCATACTAATTTTATCAATAATAAAATAAAAATTGTAGTAGCCACAATAGCATTTGGT 367017 | || | | || || ||| || | |||||| | ||||| ||||||||||||||| Sbjct 88572 ATACA-AGAAGATTGGTC--TAAAAATCTTAAAATTATTGTAGCTACAATAGCATTTGGT 88628 Query 367018 ATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATTATGGAGCTCCCAAGAATATT 367077 |||||||| ||| | ||||| || |||| || |||||| ||| || | | | Sbjct 88629 ATGGGTATAGATAGAAAAGATGTACGATTTGTAATACATTATACTCTTCCAAAAAGTGTA 88688 Query 367078 GAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATGG 367118 ||||| ||||||||||||| ||||||||| || | ||||| Sbjct 88689 GAAGGATATTATCAAGAAAGTGGTAGAGCTGGAAGAGATGG 88729 >seq168 Length=81637 Score = 111 bits (122), Expect = 1e-18 Identities = 195/283 (69%), Gaps = 6/283 (2%) Strand=Plus/Plus Query 518022 GATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAA 518081 |||| || | |||||| ||||| | | ||||| ||||| ||| | |||||| ||| | Sbjct 68847 GATTGTCTATATCTTCGCCTCCTAGCTGTGTATTACCTGATGTACTTTTTACTTCGAATA 68906 Query 518082 GTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAA 518141 ||||| | | ||||| | |||||| ||||||||||| | |||| | | Sbjct 68907 CACCATCATTTAACTCCAAAATTGAAACATCAAATGTTCCACCACCTAAATCATACACTG 68966 Query 518142 GTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTG 518201 ||| ||| | || || | || |||| |||||| || | || ||||| |||| Sbjct 68967 CGACA---ATTCCATT---TTTATCCTTGTCAACACCATATGCCAGTGCTGCAGCTGTTG 69020 Query 518202 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 518261 ||||||| |||| | ||| | | ||||| | |||| | | || ||| || |||| Sbjct 69021 GTTCATTTATAACACGTGCAACCTCTATTCCAGCCACTCTTGCAGAATTTTTTGTAGCTT 69080 Query 518262 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 518304 ||| ||||| ||| | |||||||||||| || |||||||| || Sbjct 69081 GTCGTTGTGCATCATCAAAATATGCAGGTACTGTAATAACAGC 69123 >seq328 Length=42959 Score = 105 bits (116), Expect = 5e-17 Identities = 390/601 (65%), Gaps = 15/601 (2%) Strand=Plus/Minus Query 517136 TTGTTATCTGCTTCTTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCA 517195 || |||||||||||||| || || |||||| | |||||||| || | ||||| Sbjct 5976 TTTTTATCTGCTTCTTCGTGTTTCTTGGCTTCTTCTACCATTCTCTTAACATCTTCTTCT 5917 Query 517196 GAGAATCTTCCGCGATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCA 517255 ||| |||||| | |||| || | || | || | | || |||| || ||| Sbjct 5916 GAGTGTCTTCCTCTCATATTCGTTACTGTTAGATGTTGTGTGTTACTTGTAGAAAGATCC 5857 Query 517256 GCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGG 517315 ||| || || ||||| ||||| ||| ||| | ||| || | ||||| ||||| ||| Sbjct 5856 TTGGCTGTTACTTTAAGGATACCGTTGTTATCAATTTCACATTTAACTTCTATTTGTGGG 5797 Query 517316 ACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCT 517375 || ||||| | || |||||||| || || ||||| || || | |||||||||| Sbjct 5796 ACTCCTCTTGGTGCTGGTGGGATTCCATCTAAATTGAAACGACCTAATAAATTATTATCT 5737 Query 517376 -TTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGA 517434 | |||| || ||| || || |||| || || || | |||||||||||| Sbjct 5736 CCAAATGAA-GATCTTTCTCCTTCACAAATAGAAATTGTTACGGATGGTTGATTATCTGA 5678 Query 517435 ATAAGTTGTAAATACTCTGGATTTTTTA-CAAGGAATTGTTGTGTTTCTATCAATAATAT 517493 || || ||||||||| ||| | || | || || |||| || || ||| Sbjct 5677 GTAGGTAGTAAATACT-TGGGTCTTGGATGTTGGGATGGTTGAACACTTAGGGATCATAG 5619 Query 517494 TGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGA 517553 || ||| || ||||| ||||| | | || | ||| || || | |||| || | Sbjct 5618 GTGTTGCAATTCCTCCTGCAGTTTCAATAGAAATTGTAAGTGGGGTTGCGTCAAGAAGTA 5559 Query 517554 CAATATTTTGAAGTTTTTC---ATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAG 517610 ||| ||| | | | || |||||| | || | | | ||||||||| ||| | Sbjct 5558 AAATGTTTCCACGATCATCTAAATCAGTATCTCCTTCTAATAAAGCTGCTTGGTAAGCTG 5499 Query 517611 CACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTA---GTTTTTTACCATTGA 517667 | || |||||| ||||||||||| | || || | || | || ||| || || Sbjct 5498 CTCCCAATGCAATTGCTTCATCAGGGTGAAGAGAGTGGTTAATCTTTTGTTTTCC---GA 5442 Query 517668 AAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACA 517726 | || | || ||| |||| | ||||| ||||| | ||| ||||| || |||| |||| Sbjct 5441 AGAATTCTTCTAAG-AGTTCTAAAACCTTTGGAATTCTAGAAGATCCACCTACTACTACA 5383 Query 517727 A 517727 | Sbjct 5382 A 5382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780803046915340