Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887935.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq24 118 1e-21 >seq24 Length=118493 Score = 118 bits (130), Expect = 1e-21 Identities = 325/486 (67%), Gaps = 18/486 (4%) Strand=Plus/Minus Query 101816 TTGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTCTAAATGA 101875 ||||||||||||||| |||||| | || || ||||| ||||||||||| ||| ||||| Sbjct 56533 TTGGACTGCTGAAGAAGTAGATTTATCTAATGATTTAGACGATTGGAATGGTCTTAATGA 56474 Query 101876 AAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGT 101935 |||||| | || |||| || | ||||||| ||||| | || ||||| ||||| Sbjct 56473 TGATGAAAGACATTTTATAAGTTATGTGTTGGCATTTTTTGCAGCATCAGATGGGATTGT 56414 Query 101936 TTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGATCTT 101994 | ||| ||| | | || ||||| | || || || || | | ||||| |||| | Sbjct 56413 TAATGAAAATCTTTTAGAAAATTTTGCAGCGGAAGTTCAGATAC-CAGAAGCTAGATGTG 56355 Query 101995 TCTATGCGTATCAATGTCATAAT-GAAATGGTGCATGGGGAGACATACAGTAAACTCATA 102053 | |||| | || | | || || |||| | ||| |||| ||| || ||| Sbjct 56354 TTTATG-GATTCCAAATAATGATAGAAAATATACATTCTGAGATGTACTCATTGCTAATA 56296 Query 102054 GACAAGTATATTAAGGATGGTGCTGAGAAGAAGCA---GCTCTTTGAAGCCATCCAAACA 102110 || | ||||||| || | ||||| || | | ||| | || || ||| Sbjct 56295 GAAACATATATTA--GA-GAACAAGAGAAAAAAGATTTTTTATTTAACGCAATTTCTACA 56239 Query 102111 GTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTT---TGATACAAAGTCG 102167 | ||| ||| |||| ||||| || ||| ||||||| ||| | |||| ||| || Sbjct 56238 ATACCAACAATTAAAAATAAAGCAGACTGGACTATGAAATGGATAACGGATAAAAAATCA 56179 Query 102168 CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGT 102227 || |||||| || | | ||||||||||| || || ||||| ||||||||||| Sbjct 56178 TGT---TTTGCTACAAGAATAATTGCATTTGCGTGCGTAGAAGGTATTTTCTTCTCTGGA 56122 Query 102228 TCCTTCTGC-GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 102286 | ||| ||| | || | ||||| || || || || | ||||||||||| ||||| Sbjct 56121 T-CTTTTGCATCCATATTCTGGCTTAAAAAACGTGGATTAATGCCAGGTCTTACTTTCTC 56063 Query 102287 CAACGA 102292 ||| || Sbjct 56062 CAATGA 56057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620739373880800