Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887935.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq370 461 9e-125 seq24 376 3e-99 >seq370 Length=149473 Score = 461 bits (510), Expect = 9e-125 Identities = 1221/1862 (66%), Gaps = 55/1862 (3%) Strand=Plus/Minus Query 46966 ATTTGTCTTTTTCCACAGTAAACTTAAT----TGGATTACTCGCTGATTTTGTTCGTAA- 47020 |||||| || || || ||||| ||||| || |||||| ||| || || ||| Sbjct 56078 ATTTGT--TTGTCTACTGTAAATTTAATAGCCTGCATTACTGGCT-----TGGTCCTAAG 56026 Query 47021 ATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTT 47080 ||| ||||| ||||||||||| | | |||||| |||||||||||||| | | Sbjct 56025 ATAGTACATTCCAGTCTTTAATTGTTTTTTGTGTCCATAAAAATGCATACTAGTAAGCTG 55966 Query 47081 AGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACC 47140 ||||| | ||| | ||| ||||||||||||||| ||||||| | ||| Sbjct 55965 TGAATATGTGGGTGTAGCTATAAAAATATTAAGAGATTGTGATTGATCAACATATGGTGT 55906 Query 47141 TCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAAT 47200 ||||||||| || | |||||||||| | | || |||||| ||||| |||| | Sbjct 55905 TCTATCAGCAGCTAAATCTAAAATAGATTTCATTTTTAATTCCCATGCTGTTCTATACAA 55846 Query 47201 TTGTTTAATGTCTTCTGGGAGA---TTAGTATTTTGAATAGATCCTCCgttttctataat 47257 | |||||| |||| ||| | | | ||| ||| ||||| || |||| | | | Sbjct 55845 ATATTTAATTTCTTTTGGTATAGCTTCTATATCTTGGATAGAACCATCGTTCTGAACTAC 55786 Query 47258 tttgttttttaattcatttgaccaaagttttcgttc-agttaatgttt--ttaaAAGATG 47314 | |||||||| ||| || ||| || || ||| ||| ||| ||| ||||| | Sbjct 55785 TAGGTTTTTTATTTCTTTATTCCAGAGATTAAGTTTTAGTAAATCTTTAATTAAA---TA 55729 Query 47315 AGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATA 47374 || ||| |||| |||||| ||||||| || ||| | | |||| ||||| || | Sbjct 55728 AGAATTTACAACTTGAAAATCTCCAGCTAAAGTTCTTCTGGTATAAATATTTGAAGTTAA 55669 Query 47375 TGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGC 47434 ||||||||| |||||||| || |||||||| | || |||||||||||||| || Sbjct 55668 AGGTTCTATACATTCATTAAAACCCAAAATTTGGGATGTAGATGCTGTAGGCATAACAGC 55609 Query 47435 AACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATC 47494 ||| ||||| |||||| ||||||| |||| || | | |||||| Sbjct 55608 AACAAATAATGAATTTCTAACTCCATGCTTTTTGATTTTTTCTCTCAAAATATCCCAATC 55549 Query 47495 CCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGG 47554 | | ||||| ||| || | | |||| | || | | || | ||| | || Sbjct 55548 TAATAAATCTGTTGGGGTGGTTTTATACATATCAAAATGTAATAGACCCTGACTCAATGG 55489 Query 47555 AGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAA 47614 ||| || | |||||||| |||| ||| || ||| || | |||| ||||| |||||| Sbjct 55488 AGATCCCTCATATGTTTCGTAAGTACCATACCGTTCTGCTAATTCAGTACTTGATTCCAA 55429 Query 47615 TGCACTATAATATATTGTTTCAAATATTT--TTATGTTTAGATTCCTTGCTTCTGATGAT 47672 |||| |||||| || ||||| || |||| |||| || | | | || |||||| Sbjct 55428 TGCAGAATAATAAATAGTTTCGAAAATTTGCTTAT-TTAATAAT-CTAGCTTCTTCACTA 55371 Query 47673 TCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATT 47732 ||||| || ||| ||| || |||||||||||||||||||| || Sbjct 55370 TCAAATGGCATTCTTAGAATAATAAATACATCGGCTAATCCTTGAACACCAATACCCATA 55311 Query 47733 GGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATA 47792 |||||||| | ||||| | || |||| || ||||||||| || | ||||| Sbjct 55310 GGTCTATGTCTCATATTACTTTTTTTAGTTTCTTCTACTGGATATTTTGTTCTGTCTATT 55251 Query 47793 ATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAAC 47852 | ||| | | || || ||| ||| ||| | |||||||| Sbjct 55250 ACCCTATCCAAATTTTTTACAAGAACTTTTACTATCTCTTTTAGTTTTATGAAATCAAAT 55191 Query 47853 TTGTTATTTATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCA 47912 ||||||| | ||| || | ||| |||| ||||||| |||||| ||||||| ||| Sbjct 55190 TTGTTATCTTTAATGAAAGTTGGAAGACCTATTGATGCTAAATTACAAACAGCTATTTCA 55131 Query 47913 TTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAA 47972 | || ||||| || | |||||| ||||| |||||| |||||| |||| || | | Sbjct 55130 TCAGGCTTAGTTACTTCAACTATTTCTGCACAAAGATTAGAACATTTTATAGATCCAATA 55071 Query 47973 TTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTT 48032 |||| || ||| | ||||| | || || |||| || ||||| | || ||| Sbjct 55070 TTTTTCTGGTTAGAATATCTATTACACGTATCTTTATAAATTATGAAAGGATTACCTGTT 55011 Query 48033 TCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCT 48092 ||||| || | |||||| || | |||||||| | ||| ||| |||| || Sbjct 55010 TCTATTTGTGTTTCAATTATCGTTTTCCAAAGATGTTGAGCTTTT---ACAGTTC----- 54959 Query 48093 TTATT----ATCAT----GTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACA 48144 ||||| ||| | ||| |||| ||| | || |||| || | ||| Sbjct 54958 TTATTGCCAATCCTTTTGCTTCATATTCTTCATAAAGTTTTACAAACTCTT---CATTGT 54902 Query 48145 CATTATC---TAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTT 48201 || || ||| |||| | || | | | | | ||||||||| | || | || Sbjct 54901 GTTTCTCCCATAAATCAGGTGCTGTATCCGCAGAAAAAAGTGACCAATCTTTATTTTCTT 54842 Query 48202 TTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTA 48261 ||||| |||| |||| |||||||| |||||| ||| ||||||||| || ||||||| Sbjct 54841 CGACTCTTTTCATGAATAAATCTGGTACCCAAAGTCCTAAAAATAAATCTCTTGTTCTTA 54782 Query 48262 GTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATG 48321 ||| || || ||| |||| || | | ||| | ||| || || || ||||||||| Sbjct 54781 CTTCGTCTTTTCCAACATTCTTTCTTAATTCTAAAAATTCATAGATTTCTACATGCCATG 54722 Query 48322 GTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGG 48381 |||||| |||| ||||||| |||| |||| || || |||||||||| || ||| | | Sbjct 54721 GTTCTATGTATACTGCCATTGCACCAGGTCTCTTTTTTCCTCCTTGATTTACATACTTTG 54662 Query 48382 CAGTATTGTTATAAACTCTTAA-CATTGGGACAATACCATTTGATATACCATTGGTTCCC 48440 || | || || | |||| ||| || |||| || |||| | ||| || Sbjct 54661 TTGT-TGCTTCAAATGTTTTAAGCATAGGTACAACTCCGAGTGATCTTCCACCTGTAGAT 54603 Query 48441 GAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATT 48500 || | ||| | ||||| | |||| ||| ||| |||| ||| ||||| || Sbjct 54602 TTTATTGTAGATCCTTTTGCTCTCACATTATGAATATTAATTCCTAGACCTCCTGCACTT 54543 Query 48501 TTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATC 48560 |||||||| |||||||| ||| | ||||| | || ||||||||| ||| ||| | Sbjct 54542 TTAGATATAAGAGCACAGTTTTTCACAGTATCGAATATACCTTCTATAGAATCCTCTTTG 54483 Query 48561 ATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTT 48620 |||| || |||||||| | || ||| || ||||| |||||||| ||||| Sbjct 54482 ATATCCAAAAGAAAACATGAACTCAATTGATTATTCTTTGTTCCGGAATTAAACAATGTA 54423 Query 48621 GGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCT 48680 || | ||| |||||||| |||| | || | || ||||| || | | || |||| Sbjct 54422 GGTGTTGCGTGAATAAAATATTTTTTAGACATTAAATTATACGTCTGTAACGCATCATCT 54363 Query 48681 ATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCA-AC 48739 || || | ||| || ||| | ||||||||| || | || || ||||||||| || Sbjct 54362 ATTTCTTCATCATGAATTTCTAAGGCTACACGCATAAAAACATCCTGTGGTCTTTCATAC 54303 Query 48740 AAT--TTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAG 48797 || || |||| |||| || | ||| ||| ||| ||| ||||| | |||||||| Sbjct 54302 CATAAATTTTTAT---TTTTTAACAAATACGATCTTTGCAAAGTTTTCACCCCAAAATAA 54246 Query 48798 TT 48799 || Sbjct 54245 TT 54244 >seq24 Length=118493 Score = 376 bits (416), Expect = 3e-99 Identities = 627/893 (70%), Gaps = 26/893 (3%) Strand=Plus/Plus Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 || ||||| || |||||||||||||||||||| |||||||| | ||| |||||| |||| Sbjct 55727 TGGTATTCTGCGACTCTTTTTTCAAAGAAATTGGTTTTTCCTTGTAAAGATATATTTTCC 55786 Query 18733 ATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGT 18792 || |||||||||||||||| || || ||| |||||||| || | || || Sbjct 55787 ATGAAATCAAATGGATTTTCAGTGTTGTAATGTTTAGAGAATCCTAGATCAACTAAGAGA 55846 Query 18793 CTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTA 18852 | || || ||||||| || || | ||| | ||| |||||||| ||||| | Sbjct 55847 TTGTCAGCCACAAATTCTATGTAATTACACATAGATTTACAGTTCATTCCAATTAAACTT 55906 Query 18853 ACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGAT 18912 || ||||| || | || |||||||||||| || |||||| ||| | || Sbjct 55907 ACGGGTAGACTTTCAGAAACAAATTCTTGTTCAATTGCTACTGCTTCTTTAACTATTTCG 55966 Query 18913 ACAACTCTATCTTCATTAGGAGGGTATAG----AAGATG----TTTAAACATCAAACATG 18964 | ||| | ||||| || | | | ||| || ||||| | ||||| Sbjct 55967 ATTACTGT---TTCATATGGTGCTTTTTCTTCTAAG-TGAGCATTTAAG----AGACATG 56018 Query 18965 CAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAG 19024 |||| ||| ||| | ||| || |||||||| || |||||||| || || || | ||| | Sbjct 56019 CAAATTCAACATGCACTCCTTCATCTCTACTGATTAATTCATTGGAGAAAGTAAGACCTG 56078 Query 19025 GCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATAC 19084 |||| | ||| | |||||| | ||||||||| || ||||| |||||||| ||||| |||| Sbjct 56079 GCATTAATCCACGTTTTTTAAGCCAGAATATGGATGCAAAAGATCCAGAGAAGAAAATAC 56138 Query 19085 CTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCC 19144 ||||||| ||||| |||| || |||| || ||| | | |||| |||| Sbjct 56139 CTTCTACGCACGCAAATGCAATTATTCTTGTAGCAAAACATGATTTTTTATCCGTTATCC 56198 Query 19145 ATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204 |||||| | ||| || || || ||||| | ||| ||||| || | ||||||| Sbjct 56199 ATTTCATAGTCCAGTCTGCTTTATTTTTAATTGTTGGTATTGTAGAAATTGCGTTAAATA 56258 Query 19205 GATACATACGCTCATCTGT--ATCTTTAACATATGCATCTATCAATAAACTGTACATTTC 19262 | | || | | ||| | ||| ||| ||||| ||||| | || |||||| || Sbjct 56259 -AAAAAT-CTTTTTTCTCTTGTTCTCTAATATATGTTTCTATTAGCAATGAGTACATCTC 56316 Query 19263 TGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTG 19322 ||||| ||||||||||| || || ||||| |||| |||||| ||||||| |||||| Sbjct 56317 AGAATGTATATTTTCTATCATTATTTGGAATCCATAAACACATCTAGCTTCTGGTATCTG 56376 Query 19323 TACTT-CACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAA 19381 |||| | || |||||| |||| | | |||||||||||| || ||||| ||||||| Sbjct 56377 AACTTCCGCTGCAAAAT-TTTCTAAAAGATTTTCATTAACAATCCCATCTGATGCTGCAA 56435 Query 19382 AAAATGCTAATACATGTTTAATAAAATGTTTTTCATC-TGAGGTTAA-TGTATTCCAATC 19439 ||||||| || |||| | ||||||||| ||||||| | | |||| ||||||||| Sbjct 56436 AAAATGCCAACACATAACTTATAAAATGTCTTTCATCATCA--TTAAGACCATTCCAATC 56493 Query 19440 ATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTT 19499 | | ||| ||||||||||||||||||||| | |||||||| || | ||| | || Sbjct 56494 GTCTAAATCATTAGATAAATCTACTTCTTCAGCAGTCCAAAACGATGAAAGTGCCTGCTT 56553 Query 19500 ATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTT 19552 ||| | | ||||||| | |||| ||| ||||| | ||||||||||| || Sbjct 56554 ATATAAATCCCATATACGATCGTATTTTATTGGAAACAAAACAAATCTATCTT 56606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562106059719600