Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887935.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq290 183 2e-41 seq157 181 8e-41 >seq290 Length=54858 Score = 183 bits (202), Expect = 2e-41 Identities = 179/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 101239 ATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATC 101298 ||| || |||||||| | ||| |||||||| | |||||||| || |||||||| ||||| Sbjct 33840 ATTACCACCTCTTAATCTTAATACTAAATGCAACGTAGATTCCTTCTGTATATTATAATC 33899 Query 101299 GGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGG 101358 | | ||||| |||| || | || || |||||||||||||| | ||||||||| || Sbjct 33900 GCTTAATGTTCTACCATCCTCGAGCTGTTTTCCTGCAAATATCAATCTCTGTTGATCTGG 33959 Query 101359 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTC 101418 || || ||||||||||| || || || |||||| |||||| ||| ||||| |||| Sbjct 33960 AGGTATTCCTTCTTTATCCTGTATCTTAGCCTTTACATTTTCTATAGTATCAGAATTTTC 34019 Query 101419 CACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||||||||| | ||||| || || | |||||| ||||| |||||||| Sbjct 34020 TACTTCAAGAGTAATTGTTTTTCCTGTGAGAGTTTTAACAAAGATCTGCAT 34070 >seq157 Length=84007 Score = 181 bits (200), Expect = 8e-41 Identities = 178/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 101240 TTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCG 101299 |||||||| || || | | ||| |||||||| ||||||||||| || ||||||||||| Sbjct 52146 TTTCCTCCCCTCAATCTAAGAACCAAATGAAGTGTAGATTCTTTCTGGATATTGTAATCA 52087 Query 101300 GCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGC 101359 | ||||| |||| |||||||| ||||||||||||||||| | |||||||| || Sbjct 52086 CTCAATGTTCTACCATCTTCCAATTGTTTACCTGCAAATATCAATCTTTGTTGATCTGGA 52027 Query 101360 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCC 101419 || || ||||| || ||||| |||||| ||| ||| |||||| | ||| | | ||| Sbjct 52026 GGTATTCCTTCCTTGTCTTGTATTTTTGCTTTGACATTTTCTATGGAGTCGGTGGATTCG 51967 Query 101420 ACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || |||| || ||||| || | ||||| |||||||||||||| Sbjct 51966 ACTTCTAGTGTGATTGTCTTGCCCGTAAGCGTTTTGACAAATATCTGCAT 51917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396276516439230