Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887935.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq24 259 9e-64 seq290 187 5e-42 seq157 158 2e-33 >seq24 Length=118493 Score = 259 bits (286), Expect = 9e-64 Identities = 523/780 (67%), Gaps = 9/780 (1%) Strand=Plus/Plus Query 49573 CTTCTAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTC-- 49630 ||| ||| ||||| | ||| |||||||||||||||| || || |||| ||| Sbjct 55767 CTTGTAAAGATATATTTTCCATGAAATCAAATGGATTTTCAGTGTTGTAATGTTTAGAGA 55826 Query 49631 -TCCTATCAATACATATAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATT 49689 ||||| || || ||| | | || || |||||||| | || | |||| ||| Sbjct 55827 ATCCTAG--AT-CAACTAAGAGATTGTCAGCCACAAATTCTATGTAATTACACATAGATT 55883 Query 49690 CACAATTCATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctattt 49749 ||| ||||| || | ||| | | |||| ||| || |||||||| ||| ||| Sbjct 55884 TACAGTTCATTCCAATTAAACTTACGGGTAGACTTTCAGAAACAAATTCTTGTTCAATTG 55943 Query 49750 ctacagcttgtttaattatcataattatattattttttgataatttatatttaatatgat 49809 |||| |||| ||||| ||| |||| | | | || | ||| | || | ||| Sbjct 55944 CTACTGCTTCTTTAACTATTTCGATTACTGTTTCATATGGTGCTTTTTCTTCTAAGTGA- 56002 Query 49810 tcgcatatattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCAT 49869 |||| || | ||||||||| ||| ||| | || || || ||| || ||||||| Sbjct 56003 --GCATTTAAGAGACATGCAAATTCAACATGCACTCCTTCATCTCTACTGATTAATTCAT 56060 Query 49870 TACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAAC 49929 | ||||| | |||||||||||||| | ||||||||||| ||||| ||||||||| Sbjct 56061 TGGAGAAAGTAAGACCTGGCATTAATCCACGTTTTTTAAGCCAGAATATGGATGCAAAAG 56120 Query 49930 TACTAGAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTA 49989 | ||| ||||| ||||| || || ||||||||||| |||||||||| |||| | Sbjct 56121 ATCCAGAGAAGAAAATACCTTCTACGCACGCAAATGCAATTATTCTTGTAGCAAAACATG 56180 Query 49990 ATTTATCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATAT 50049 |||| | ||| |||||| || |||| ||| |||||||| ||||| || | ||||| Sbjct 56181 ATTTTTTATCCGTTATCCATTTCATAGTCCAGTCTGCTTTATTTTTAATTGTTGGTATTG 56240 Query 50050 TTTCTATAGCTTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTA 50109 | || || |||||||| || ||||| | |||| Sbjct 56241 TAGAAATTGCGTTAAATAAAAAATCTTTTTTCTCTTGTTCTCTAATATATGTTTCTATTA 56300 Query 50110 ATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTC 50169 || || ||||| |||||||||| | ||| || |||||| ||| ||||| || Sbjct 56301 GCAATGAGTACATCTCAGAATGTATATTTTCTATCATTATTTGGAATCCATAAACACATC 56360 Query 50170 TTGCTTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATAC 50229 | ||||||| ||||||||| | || ||| | | ||| ||| ||||| | Sbjct 56361 TAGCTTCTGGTATCTGAACTTCCGCTGCAAAATTTTCTAAAAGATTTTCATTAACAATCC 56420 Query 50230 CATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTA 50289 |||| |||||||| || ||||| || || || | ||||||||| |||||| ||| || | Sbjct 56421 CATCTGATGCTGCAAAAAATGCCAACACATAACTTATAAAATGTCTTTCATCATCATTAA 56480 Query 50290 AATTTTCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATG 50349 | | |||| || | ||| || ||||||||||||||||| |||||||| |||| Sbjct 56481 GACCATTCCAATCGTCTAAATCATTAGATAAATCTACTTCTTCAGCAGTCCAAAACGATG 56540 >seq290 Length=54858 Score = 187 bits (206), Expect = 5e-42 Identities = 184/237 (78%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 192300 TTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATT 192359 |||||| |||||||||| | | |||||||||||| || |||| || || ||||| Sbjct 33836 TTTAAT--TACCACCTCTTAATCTTAATACTAAATGCAACGTAGATTCCTTCTGTATATT 33893 Query 192360 ATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTG 192419 |||||| |||||||| |||| || | ||||| || ||||| || ||||||||||| Sbjct 33894 ATAATCGCTTAATGTTCTACCATCCTCGAGCTGTTTTCCTGCAAATATCAATCTCTGTTG 33953 Query 192420 ATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGA 192479 ||| || ||||||||||||||||| ||||| ||| |||||||| ||||| ||| || Sbjct 33954 ATCTGGAGGTATTCCTTCTTTATCCTGTATCTTAGCCTTTACATTTTCTATAGTATCAGA 34013 Query 192480 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||||| |||||||| ||||| || || | ||||||| ||| |||||||| Sbjct 34014 ATTTTCTACTTCAAGAGTAATTGTTTTTCCTGTGAGAGTTTTAACAAAGATCTGCAT 34070 >seq157 Length=84007 Score = 158 bits (174), Expect = 2e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387 || ||||| | |||| ||||| |||||| |||||| ||||||| |||| ||| Sbjct 52125 ACCAAATGAAGTGTAGATTCTTTCTGGATATTGTAATCACTCAATGTTCTACCATCTTCC 52066 Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 ||||||||||| ||||| || ||||| |||||||| || ||||||||||| || |||||| Sbjct 52065 AATTGTTTACCTGCAAATATCAATCTTTGTTGATCTGGAGGTATTCCTTCCTTGTCTTGT 52006 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 ||||| ||| ||||| ||| || || | ||||| |||||||| || || || || Sbjct 52005 ATTTTTGCTTTGACATTTTCTATGGAGTCGGTGGATTCGACTTCTAGTGTGATTGTCTTG 51946 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || | ||||| | ||||||||||||| Sbjct 51945 CCCGTAAGCGTTTTGACAAATATCTGCATT 51916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984475080676500