Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887935.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq5 120 4e-22 seq390 111 2e-19 >seq5 Length=4344 Score = 120 bits (132), Expect = 4e-22 Identities = 201/287 (70%), Gaps = 13/287 (5%) Strand=Plus/Plus Query 172708 AAATGGTTCTTCCTCCTTGCCATACTTTAGCACAATTTTATGTCAGaaaaaaaTCAATCT 172767 |||||| |||||| || || ||| |||| |||||||||||| | | || ||| | Sbjct 82 AAATGGCTCTTCCACCATGTCATTGTTTATTTCAATTTTATGTCGCAGATAA--CAAATT 139 Query 172768 TAGATTGTCAGTTATATCAAAGATCAGCTGATTTAGGATTGGGGGTACCTTATAATATTG 172827 || ||||| |||||||||||||| | |||| | |||||||| ||||||| |||||||| Sbjct 140 AAG-TTGTCTTTTATATCAAAGATCTGGTGATATGGGATTGGGAGTACCTTTTAATATTG 198 Query 172828 GATTTTATTCATTTTT---AATACTTGTGTTAA--GTAAATGGTGCAATTTAACTCCAGG 172882 |||||| || | || | ||| || || | ||| ||| ||||| Sbjct 199 CTAGTTATTCCCTTCTTGCTTTAATGGTGGCAAAGGTTACTGG-----ATTAGAACCAGG 253 Query 172883 AAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAATCATGTTGAACCTTTAAA 172942 | ||||| ||| |||| ||||||||||| | ||| ||||| | ||||| |||| Sbjct 254 TGAATTTATCCATTCTTTAGGAGATGTTCATTTATATGAGAATCACATCGAACCAATAAA 313 Query 172943 GGTTCAATTAAAAAGAAAACCATATACTTTTCCAAATGTTAAATTTA 172989 |||||| |||||| ||| ||| | || || || ||||||||| Sbjct 314 AAAGCAATTAGAAAGAACACCTTATCCATTCCCTAAAATTAAATTTA 360 >seq390 Length=4512 Score = 111 bits (122), Expect = 2e-19 Identities = 199/287 (69%), Gaps = 13/287 (5%) Strand=Plus/Plus Query 172708 AAATGGTTCTTCCTCCTTGCCATACTTTAGCACAATTTTATGTCAGaaaaaaaTCAATCT 172767 |||||| |||||| || || ||| |||| |||||||||||| | | ||| ||| Sbjct 82 AAATGGCTCTTCCACCATGTCATTGTTTATTTCAATTTTATGTC-GCTGATAATAAAT-- 138 Query 172768 TAGATTGTCAGTTATATCAAAGATCAGCTGATTTAGGATTGGGGGTACCTTATAATATTG 172827 || ||||| |||||||||||||| | |||| | |||||||| ||||||| |||||||| Sbjct 139 TAAGTTGTCTTTTATATCAAAGATCCGGTGATATGGGATTGGGAGTACCTTTTAATATTG 198 Query 172828 GATTTTATTCATTTTT---AATACTTGTG--TTAAGTAAATGGTGCAATTTAACTCCAGG 172882 ||||||| || | || | ||| |||| | ||| ||| ||||| Sbjct 199 CTAGTTATTCACTTCTTGCTTTAATGGTGGCAAAAGTTACTGG-----ATTAGAACCAGG 253 Query 172883 AAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAATCATGTTGAACCTTTAAA 172942 | ||||| ||| |||| || |||||||| | ||| ||||| |||| || |||| Sbjct 254 TGAATTTATCCATTCTTTAGGTGATGTTCATTTATATGAGAATCACATTGAGCCAATAAA 313 Query 172943 GGTTCAATTAAAAAGAAAACCATATACTTTTCCAAATGTTAAATTTA 172989 ||| | |||||| ||| ||| | || || || ||||||||| Sbjct 314 AAAGCAACTTGAAAGAACACCTTATCCATTCCCTAAAATTAAATTTA 360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632486516613200