Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887935.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq290 95.1 1e-14 seq157 87.8 1e-12 >seq290 Length=54858 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| |||||| | || || ||||| ||||| | ||| || | Sbjct 34070 ATGCAGATCTTTGTTAAAACTCTCACAGGAAAAACAATTACTCTTGAAGTAGAAAATTCT 34011 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | ||||| ||||| || |||||||| | || |||||| Sbjct 34010 GATACTATAGAAAATGTAAAGGCTAAGATACAGGATAAAGAAGGAATACCTCCAGATCAA 33951 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | || | ||| || |||||||| ||||||| |||||| | ||||| || Sbjct 33950 CAGAGATTGATATTTGCAGGAAAACAGCTCGAGGATGGTAGAACATTAAGCGATTATAAT 33891 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAAA 110502 || || || |||||||||||||| | || |||||| | |||| || || Sbjct 33890 ATACAGAAGGAATCTACGTTGCATTTAGTATTAAGATTAAGAGGTGGTAA 33841 >seq157 Length=84007 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| |||||||||||||| | || ||||| || || || | ||| || | Sbjct 51916 AATGCAGATATTTGTCAAAACGCTTACGGGCAAGACAATCACACTAGAAGTCGAATCCAC 51975 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| | | | | || ||| || || ||||| ||||| | || ||||| Sbjct 51976 CGACTCCATAGAAAATGTCAAAGCAAAAATACAAGACAAGGAAGGAATACCTCCAGATCA 52035 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||||||| | || | ||| |||||||| |||| |||| |||||| || |||||||| Sbjct 52036 ACAAAGATTGATATTTGCAGGTAAACAATTGGAAGATGGTAGAACATTGAGTGATTACAA 52095 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAAAAAATAAA 110509 || || ||||||||||| | || |||| | ||| || | || ||||| || ||| Sbjct 52096 TATCCAGAAAGAATCTACACTTCATTTGGTTCTTAGATTGAGGGGAGGAAAGAAGAAA 52153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412839637712270