Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887935.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq5 114 2e-20 seq390 105 8e-18 seq301 89.7 6e-13 >seq5 Length=4344 Score = 114 bits (126), Expect = 2e-20 Identities = 200/287 (70%), Gaps = 13/287 (5%) Strand=Plus/Plus Query 171920 AAATGGTTCTTCCTCCTTGCCACACTTTAGCACAATTTTATGTCAGaaaaaaaTCAATCT 171979 |||||| |||||| || || || |||| |||||||||||| | | || ||| | Sbjct 82 AAATGGCTCTTCCACCATGTCATTGTTTATTTCAATTTTATGTCGCAGATAA--CAAATT 139 Query 171980 TAGATTGTCAGTTATATCAAAGATCAGCTGATTTAGGATTGGGGGTACCTTATAATATTG 172039 || ||||| |||||||||||||| | |||| | |||||||| ||||||| |||||||| Sbjct 140 AAG-TTGTCTTTTATATCAAAGATCTGGTGATATGGGATTGGGAGTACCTTTTAATATTG 198 Query 172040 GATTTTATTCATTTTT---AATACTTGTGTTAA--GTAAATGGTGCAATTTAACTCCAGG 172094 |||||| || | || | ||| || || | ||| ||| ||||| Sbjct 199 CTAGTTATTCCCTTCTTGCTTTAATGGTGGCAAAGGTTACTGG-----ATTAGAACCAGG 253 Query 172095 AAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAATCATGTTGAACCTTTAAA 172154 | ||||| ||| |||| ||||||||||| | ||| ||||| | ||||| |||| Sbjct 254 TGAATTTATCCATTCTTTAGGAGATGTTCATTTATATGAGAATCACATCGAACCAATAAA 313 Query 172155 GGTTCAATTAAAAAGAAAACCATATACTTTTCCAAATGTTAAATTTA 172201 |||||| |||||| ||| ||| | || || || ||||||||| Sbjct 314 AAAGCAATTAGAAAGAACACCTTATCCATTCCCTAAAATTAAATTTA 360 >seq390 Length=4512 Score = 105 bits (116), Expect = 8e-18 Identities = 198/287 (69%), Gaps = 13/287 (5%) Strand=Plus/Plus Query 171920 AAATGGTTCTTCCTCCTTGCCACACTTTAGCACAATTTTATGTCAGaaaaaaaTCAATCT 171979 |||||| |||||| || || || |||| |||||||||||| | | ||| ||| Sbjct 82 AAATGGCTCTTCCACCATGTCATTGTTTATTTCAATTTTATGTC-GCTGATAATAAAT-- 138 Query 171980 TAGATTGTCAGTTATATCAAAGATCAGCTGATTTAGGATTGGGGGTACCTTATAATATTG 172039 || ||||| |||||||||||||| | |||| | |||||||| ||||||| |||||||| Sbjct 139 TAAGTTGTCTTTTATATCAAAGATCCGGTGATATGGGATTGGGAGTACCTTTTAATATTG 198 Query 172040 GATTTTATTCATTTTT---AATACTTGTG--TTAAGTAAATGGTGCAATTTAACTCCAGG 172094 ||||||| || | || | ||| |||| | ||| ||| ||||| Sbjct 199 CTAGTTATTCACTTCTTGCTTTAATGGTGGCAAAAGTTACTGG-----ATTAGAACCAGG 253 Query 172095 AAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAATCATGTTGAACCTTTAAA 172154 | ||||| ||| |||| || |||||||| | ||| ||||| |||| || |||| Sbjct 254 TGAATTTATCCATTCTTTAGGTGATGTTCATTTATATGAGAATCACATTGAGCCAATAAA 313 Query 172155 GGTTCAATTAAAAAGAAAACCATATACTTTTCCAAATGTTAAATTTA 172201 ||| | |||||| ||| ||| | || || || ||||||||| Sbjct 314 AAAGCAACTTGAAAGAACACCTTATCCATTCCCTAAAATTAAATTTA 360 >seq301 Length=54622 Score = 89.7 bits (98), Expect = 6e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 50440 TATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCATATGGAGCT 50499 ||||| |||||||||||||| |||||||||||||||||| | || ||| ||||| | Sbjct 19292 TATAACGCTGATTTTGATGGTGATGAAATGAATTTACATATGCCACAAACATATAATACA 19351 Query 50500 ACTGCTGAATTACAAGAATTAA 50521 | ||||||||||||||||||| Sbjct 19352 AAAGCTGAATTACAAGAATTAA 19373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628528135910400