Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887935.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq290 84.2 4e-11 >seq290 Length=54858 Score = 84.2 bits (92), Expect = 4e-11 Identities = 99/136 (73%), Gaps = 11/136 (8%) Strand=Plus/Plus Query 81647 GTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTA-----------CAGTCTTCTA 81695 ||| |||||||||||||||||||||| || |||||| | || ||| Sbjct 33874 GTAGATTCCTTCTGTATATTATAATCGCTTAATGTTCTACCATCCTCGAGCTGTTTTCCT 33933 Query 81696 ACAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTT 81755 |||| || | ||| |||||| ||||| ||||| |||| ||||| || ||||| || ||| Sbjct 33934 GCAAATATCAATCTCTGTTGATCTGGAGGTATTCCTTCTTTATCCTGTATCTTAGCCTTT 33993 Query 81756 ATATTTTCAATCGTAT 81771 | |||||| || |||| Sbjct 33994 ACATTTTCTATAGTAT 34009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903406795870400