Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887935.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_024451.1 Length=220222 Score E Sequences producing significant alignments: (Bits) Value seq390 89.7 7e-13 seq5 89.7 7e-13 >seq390 Length=4512 Score = 89.7 bits (98), Expect = 7e-13 Identities = 114/154 (74%), Gaps = 5/154 (3%) Strand=Plus/Plus Query 117826 AAAGAACAAATTTTAAGAAAGCCTAGACCATTCCCAAATCTTAAAATAAAAGAAGGTAAG 117885 ||| | ||| || ||||| ||| |||||||| || ||||| | ||| |||| || Sbjct 312 AAAAAGCAACTTGAAAGAACACCTTATCCATTCCCTAAAATTAAATTTAAA-AAGGAAAA 370 Query 117886 AAA-GACA---TCAATAATTTTGTAATCGAAGATTTTATTTTAGAAAATTATAATCCGCA 117941 | | |||| || | |||||| | | || |||||||| ||||||||||| | || Sbjct 371 ATACGACAGTATCTACGATTTTGAATTTGATGATTTTATACTAGAAAATTATGAAAGTCA 430 Query 117942 TCCGGCTATAAAAATGGATATGGCTGTTTAAGAC 117975 ||| |||||||||||||||||||||||||| || Sbjct 431 TCCAACTATAAAAATGGATATGGCTGTTTAAAAC 464 >seq5 Length=4344 Score = 89.7 bits (98), Expect = 7e-13 Identities = 104/137 (76%), Gaps = 5/137 (4%) Strand=Plus/Plus Query 117840 AAGAAAGCCTAGACCATTCCCAAATCTTAAAATAAAAGAAGGTAAGAAA-GACA---TCA 117895 ||||| ||| |||||||| || ||||| | ||| |||| || | | |||| || Sbjct 326 AAGAACACCTTATCCATTCCCTAAAATTAAATTTAAA-AAGGAAAAATACGACAGTATCT 384 Query 117896 ATAATTTTGTAATCGAAGATTTTATTTTAGAAAATTATAATCCGCATCCGGCTATAAAAA 117955 | |||||| | | || |||||||| |||||||||||| | ||||| ||||||||| Sbjct 385 ACGATTTTGAATTTGATGATTTTATATTAGAAAATTATGAAAGTCATCCAACTATAAAAA 444 Query 117956 TGGATATGGCTGTTTAA 117972 ||||||||||||||||| Sbjct 445 TGGATATGGCTGTTTAA 461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 704578965160800