Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887935.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq301 185 2e-41 seq370 152 1e-31 seq246 114 3e-20 seq168 100 7e-16 seq68 93.3 1e-13 >seq301 Length=54622 Score = 185 bits (204), Expect = 2e-41 Identities = 441/648 (68%), Gaps = 28/648 (4%) Strand=Plus/Plus Query 304880 AACAA--TTTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGC 304937 ||||| |||||||| ||| ||||| |||||||| ||||||||||| | ||| | Sbjct 18744 AACAACTTTTACAATTTCACATTGCTACATTAATAGATAATGAAATATCAGGACAGCCAC 18803 Query 304938 AGGCATCTCAAAGATCTGGCAGACCTTTAAAGGGTATTAG-GCAACGCATTAAAGGTAAA 304996 |||| ||||| ||| ||||||||||| |||| || || | | ||||||||||| Sbjct 18804 AGGCTCTTCAAAAGAGTGGAAGACCTTTAAAAAGTATAAGTGCTA-GACTTAAAGGTAAA 18862 Query 304997 GAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTA 305056 || || | | |||||||||| ||||| ||| | ||||||||| |||||||||||| Sbjct 18863 GAAGGAAGAGTAAGAGGTAATCTTATGGGTAAAAGGGTTGATTTTTCTGCAAGAAGTGTT 18922 Query 305057 ATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGAAATTGCTTTA 305116 || |||||||||||| | ||| | ||| ||||| |||||||||| |||||||| | Sbjct 18923 ATTACACCTGATTCTAATATTGGGCTTGATGAAGTAGGAGTTCCGGAACAAATTGCTAAA 18982 Query 305117 AAACTAACATTTCCAGAGAAAGTTAACGAG-AAAAATATTAAACATTTGAGACG--TTGT 305173 | || ||||||| || | || |||| || |||||| | ||| ||| | ||| Sbjct 18983 ATCCTTTCATTTCCTGAAAGAG-TAACTAGTTTTAATATT-GATTTTTTAGAAGAATTG- 19039 Query 305174 GTTCTTAATGGAAATAGCAAGTATCCAGGTGCTCGTGCTGTTATAAAACACAAGCAAAAG 305233 ||| | || | || ||||| || || | ||| |||| | | | || Sbjct 19040 GTTAAAAGAGGTCCTTATAATTATCCTGGAGCAAATTATGTAATAAGAGAAGATGGTCAG 19099 Query 305234 AAGACAATATCTTTGAACCATATCGATTTAAAACAATTCAGTAAAATGCTTGAAATTAAT 305293 ||| | ||||| | | || ||| | | |||| ||| ||| | | || Sbjct 19100 -AGAATAGATCTTAGGTATA-ATAGATCTGA---AATT------AAT-CTT--ACTGAAG 19145 Query 305294 GATATT--GTTATCAGACATTTGAATGACA-ATGATTGGGTTCTGTTCAATAGGCAACCA 305350 ||| || || |||||| | | | ||| ||| ||| || || || || || || Sbjct 19146 GATGTTTAGTAGAAAGACATAT-AGTTACAGGAGATATGGTACTTTTTAACAGACAGCCC 19204 Query 305351 TCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTT 305410 || ||||||||||| ||||||| | ||||| | | ||| ||| ||| || ||| Sbjct 19205 TCTTTGCATAAAATGAGTATGATGTCACATAAGGCAAGAGTTTTAAAGAAATTAACCTTT 19264 Query 305411 CGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAAT 305470 || |||||| | ||||| | | || ||||| || ||||||||||| |||||||||||| Sbjct 19265 CGTTTAAATCTTAGTGCCACTTCCCCGTATAACGCTGATTTTGATGGTGATGAAATGAAT 19324 Query 305471 ATGCATGTACCTCAATCAAAGGTTACAATGACTGAATTATCAGAAATA 305518 | ||| | || ||| || | ||||| |||||||| |||| || Sbjct 19325 TTACATATGCCACAAACATATAATACAAAAGCTGAATTACAAGAATTA 19372 >seq370 Length=149473 Score = 152 bits (168), Expect = 1e-31 Identities = 464/705 (66%), Gaps = 23/705 (3%) Strand=Plus/Plus Query 110465 TATTCATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGA-CAATTGGCTTCTT 110523 |||||| || || ||||| | ||||| | ||||| || | | | |||||| ||| | Sbjct 54408 TATTCACGCAACACCTACATTGTTTAATTCCGGAACAAA-GAATAATCAATTGAGTTCAT 54466 Query 110524 GCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAA 110583 | |||||| | | || || || |||||||| |||||||| | ||| || | ||| | Sbjct 54467 GTTTTCTTTTGGATATCAAAGAGGATTCTATAGAAGGTATATTCGATACTGTGAAAAACT 54526 Query 110584 CTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAA 110643 ||||||||| ||||||| | ||||| | || ||| | ||||| || | | ||| Sbjct 54527 GTGCTCTTATATCTAAAAGTGCAGGAGGTCTAGGAATTAATATTCATAATGTGAGAGCAA 54586 Query 110644 AAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCA--ACT-GGACTTGTTCCAATG-TTA 110699 ||||| | | || || | | | |||| | ||| ||| |||| || ||| ||| Sbjct 54587 AAGGATCTACAAT---AAAATCTACAGGTGGAAGATCACTCGGAGTTGTACCTATGCTTA 54643 Query 110700 AGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAA---GAGAAATGGCTCA 110756 | | || || | || |||| ||||| |||||||| || || |||| ||| || Sbjct 54644 AAACATTTGAAGCA-ACAACAAAGTATGTAAATCAAGGAGGAAAAAAGAGACCTGGTGCA 54702 Query 110757 TTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAA 110816 | || | || | ||||| |||||| ||| || | |||||| |||||| | | || Sbjct 54703 ATGGCAGTATACATAGAACCATGGCATGTAGAAATCTATGAATTTTTAGAATTAAGAAAG 54762 Query 110817 AATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGAT 110876 ||| ||| || ||| |||| || | |||||||||| | | | ||| | ||||| Sbjct 54763 AATGTTGGAAAAGACGAAGTAAGAACAAGAGATTTATTTTTAGGACTTTGGGTACCAGAT 54822 Query 110877 TTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCT 110936 |||||||||||| | || |||||||| ||||| ||| | | | | || | Sbjct 54823 TTATTCATGAAAAGAGTCGAAGAAAATAAAGATTGGTCACTTTTTTCTGCGGATACAGCA 54882 Query 110937 CCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAA 110996 |||| | ||| || | | ||||||||| | | ||||| ||| |||||||| | Sbjct 54883 CCTGATTTATGGGAGAAACACAATGAAGAGTTTGTAAAACTTTATGAAGAATATGAAGCA 54942 Query 110997 GAAGGCAAGTTTCGCA--AACAA--ATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGA 111052 ||| | || ||| || || | ||||||| | |||||| | || |||| Sbjct 54943 AAAG----GATTGGCAATAAGAACTGTAAAAGCTCAACATCTTTGGAAAACGATAATTGA 54998 Query 111053 ATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATC 111112 | ||||| | ||||| || | ||||| || | ||||||||| |||| | | || Sbjct 54999 AACACAAATAGAAACAGGTAATCCTTTCATAATTTATAAAGATACGTGTAATAGATATTC 55058 Query 111113 TAATCAAATGAATTTAGGAACAATTAAGTCTAGTAA--TTTGTGC 111155 ||| || | ||| | ||| | || || | | ||| ||||||| Sbjct 55059 TAACCAGAAAAATATTGGATCTATAAAATGTTCTAATCTTTGTGC 55103 Score = 98.7 bits (108), Expect = 2e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 112614 ATTGACAAAACGACCTATCCAATTCAAAAAGCAAAACATTCTAATAACAAGCATAGACCA 112673 || |||| ||| | |||||| | || || | ||| | ||||| | |||||||| Sbjct 55252 ATAGACAGAACAAAATATCCAGTAGAAGAAACTAAAAAAAGTAATATGAGACATAGACCT 55311 Query 112674 ATTGGCATTGGCGTACAAGGATTAGCTGATGTATTTATGATGATGCGAATTCCTTTTGAT 112733 || || ||||| || ||||||||||| ||||||||||| || | |||| || |||||| Sbjct 55312 ATGGGTATTGGTGTTCAAGGATTAGCCGATGTATTTATTATTCTAAGAATGCCATTTGAT 55371 Query 112734 TCTGACCGTGCTAAATTCTTAAATGAAAAGATTTTCGAAACAATCTATT 112782 ||| |||| ||| |||||| | | ||||||||||| || |||| Sbjct 55372 AGTGAAGAAGCTAGATTATTAAATAAGCAAATTTTCGAAACTATTTATT 55420 >seq246 Length=60991 Score = 114 bits (126), Expect = 3e-20 Identities = 254/379 (67%), Gaps = 18/379 (5%) Strand=Plus/Plus Query 279060 TATATGG-TATTCCAAAACTTGATGATGCAAACTGGGCTGGAGGTCGTAAATCTCAAGAA 279118 ||| ||| |||| ||| | || ||||| ||| | || ||| | | | ||| | || Sbjct 11695 TATTTGGATATTGAAAAGTTAGAAGATGCTAACAGAGCAGGAACTGTTGATTCTTACAAA 11754 Query 279119 TGTGCTTTATTTCTTACTGAGGGAGATTCTGCTGCTACATTTGCGATTGCTGGTTTATCT 279178 || ||||| || | || || |||||||| ||| ||||||| || | ||| || | Sbjct 11755 TGCTCTTTAATTTTAACAGAAGGAGATTCAGCTAAGACATTTGTTATGTCAGGTATAGGT 11814 Query 279179 GTTATTGGTCGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGCTCGT 279238 || | || ||| | ||||| ||||||||||| | ||||||| | | |||| || Sbjct 11815 CTTGTAGGAAAAGATCATTATGGTGTATTTCCTTTGAAAGGTAAACTTTTAAATGTACGA 11874 Query 279239 GATAAAA-TCACAACACAGGCTGGTTTAAAGCAAGTAAATGCTAATGCTGAATTGATTAA 279297 || |||||| |||| ||| | || |||| |||||||| || Sbjct 11875 GAAGCTTCTCACAA-ACAGA-----TTATGGAAAATAAA----------GAATTGATAAA 11918 Query 279298 TTTAAAACAAATATTGGGATTAGAGCAAGGTAAAAAATACAAAGATACATCAAGTTTACG 279357 | | ||| ||||| | |||||| | ||||||||| ||||||||||| | | |||| | Sbjct 11919 TATTAAAAAAATAATAGGATTAAAACAAGGTAAAGAATACAAAGATGTAAAAGATTTAAG 11978 Query 279358 ATATGGTAAAATTATTATTTTGACAGACCAAGATTTAGATGGAAGTCACATTAAAGGATT 279417 |||||| | ||||| ||| |||| || |||||| ||||| || || |||||||| Sbjct 11979 ATATGGGCATATTATAATTATGACGGATCAAGATCATGATGGTTCCCATATCAAAGGATT 12038 Query 279418 AATACTTAATTGGGTTGAT 279436 | |||||| ||||| Sbjct 12039 GTTGATTAATTTCTTTGAT 12057 >seq168 Length=81637 Score = 100 bits (110), Expect = 7e-16 Identities = 464/728 (64%), Gaps = 46/728 (6%) Strand=Plus/Minus Query 167223 AAATCTTTATTAATTATCATTACACCACCAGCATTATCGAATTCATTCGCATAATTTGGT 167282 ||||||| || || |||||| | |||| |||||||| |||||| ||||||||| Sbjct 71822 AAATCTTCATCAACGTTCATTATAGCACCTGCATTATCAAATTCACCACAATAATTTGGA 71763 Query 167283 GCTGAAAATACAGTAACTAATTTACGATTGAAAAATAATTCATAACCATCTTCAACAACT 167342 || ||||| || || |||||| | ||| ||| || |||||||| ||||||||||| Sbjct 71762 GCAGAAAAGACTGTGACTAATCCTCTATTTGCAAAAAACTCATAACCTTCTTCAACAACC 71703 Query 167343 TCATGGGCACGTATTACAAGTTCAACTCCTAtttttttAAGAAAATTAGT-TAAAGCA-- 167399 | || || | || ||| |||| | ||| ||||| | || ||| | || | | Sbjct 71702 TGGTGAGCTCTGCATATAAGATCAATTTCTAATTTTTCTA-AATATTCTTCTACAATATC 71644 Query 167400 CGTAATCCAAAT-TTATAACTACAACCTCTTTCAGATTCAGAATAATAATCAATATCATG 167458 ||| |||||| || | ||| |||||| ||| ||| | ||| | | || Sbjct 71643 AGTA--CCAAATGATACAGATAC-ACCTCTATCATTTTC----TCCCCATC-CTTTGAT- 71593 Query 167459 CGATGGATCCG------CCCAAAGAAGATCGCATACCAACCCCTTATCAGGGATATCAAT 167512 ||||| || | ||| | | ||| || | || || || |||||||| | Sbjct 71592 AGATGGTTCAGGGTCACTCCATAATAAATCACAAAGTAAACCTGATTCTGGGATATCTGT 71533 Query 167513 AGGTTTTTTAATCCTATTGATATCTTCTAATTTATTAATATCTTCAGTGATTCCACCATG 167572 |||| || |||| | || || | ||||| ||| || | ||| || ||||||||||| Sbjct 71532 AGGTCTTCTAATATTTTTAATCTGTTCTATTTTCTTCAGTTCTGGAGATATTCCACCATG 71473 Query 167573 AACACAAAAAGCCAATGGATTATCAATTGTTATTCCAATGGTTGCAGCAATAGACATAGT 167632 | ||| || |||| | || |||| ||||| || | | | Sbjct 71472 CATACATAA-----------TATCCTATCTTCAACCAA----AGCAGCTATTGGTAAACA 71428 Query 167633 GTCAAAAACATCGATGAAACTTTTCCAGATTTTTATCGAACCA---CGTCGTTTGCATTC 167689 || |||| ||| | || ||||||| | ||| |||| | || ||| ||||| Sbjct 71427 GTTAAAACAATCAGTAAATTTTTTCCATAACTTT---CCACCATATCTTCTTTTACATTC 71371 Query 167690 ATCGTAAAAACCATAGTCTCTTGAGATATCAGCACATTCGTGATTTCCTCTTAATAAAAT 167749 ||| ||||| ||||| ||| ||| ||||||||||||||| |||| ||| | || Sbjct 71370 ATCATAAAATCCATATATTCTATTTATACTAGCACATTCGTGATTACCTCGTAACATAAA 71311 Query 167750 TATGTTATTTNNNNNNNNNNNNNTGTAGCAAAATAATAACAAAATTGTTTCTAATGATTT 167809 | |||||| | || ||| || | | || ||||| ||||| | Sbjct 71310 AAAATTATTTTTATATTTTATTTTATAAGCAAACAAAAGGCATATAGTTTCCAATGACTG 71251 Query 167810 AACACCTCTATCAACATAATCACCTAAAAATATATATTTATTTTGGTTTGAAGGATTATC 167869 ||||||||| ||||||||||| | |||| ||| ||||| || | |||| | | Sbjct 71250 TTTACCTCTATCTACATAATCACCCATGAATAAATAATTATT---CTTAGGAGGAAAACC 71194 Query 167870 TAGTTTTTTAAAAATATTCAATAAATCACTAAATTGACCATGTAAATCACCTACA-ACCT 167928 | | || ||| | | || ||||| || |||| ||||| | ||| || ||| | || Sbjct 71193 TCCATATTGAAACAACTGTAACAAATCTTTATATTGCCCATGAATATCTCC-ACATATCT 71135 Query 167929 TTATGGGA 167936 |||| ||| Sbjct 71134 TTATAGGA 71127 >seq68 Length=103669 Score = 93.3 bits (102), Expect = 1e-13 Identities = 162/236 (69%), Gaps = 7/236 (3%) Strand=Plus/Minus Query 167687 TTCATCGTAAAAACCATAGTCTCTTGAGATATCAGCACATTCGTGATTTCCTCTTAATAA 167746 |||||| ||||| ||||| |||||| || || ||| |||||||||||||| || Sbjct 81914 TTCATCATAAAATCCATATATTCTTGAAATTTCTCTCGTTTCATGATTTCCTCTTAACAA 81855 Query 167747 AATTATGTTATTTNNNNNNNNNNNNNTGTA-GCAAAATAA-TAACAAAATTGTTTCTAAT 167804 || || | ||| | || | |||| || ||| |||||||||| Sbjct 81854 TATAAT--TCTTTCTGGATACATTACTTTAAGTAAAAGAAGTAATGTTATTGTTTCTATA 81797 Query 167805 GATTTAACACCTCTATCAACATAATCACCTAAAAATATATATTTATTTTGGTTTGAAGGA 167864 || || | |||||||| ||||||||||| ||||| ||| ||||| || | || || Sbjct 81796 GAATTTTCTCCTCTATCCACATAATCACCCAAAAAAATAAATTTACTT---TCTGGTGGT 81740 Query 167865 TTATCTAGTTTTTTAAAAATATTCAATAAATCACTAAATTGACCATGTAAATCACC 167920 | ||| | |||| |||||||| ||||||||| | |||| || || | |||||| Sbjct 81739 GTTCCTATTATTTTGAAAATATTTAATAAATCAAAATATTGGCCGTGAATATCACC 81684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186806869644790