Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887935.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq157 93.3 4e-14 seq290 84.2 2e-11 >seq157 Length=84007 Score = 93.3 bits (102), Expect = 4e-14 Identities = 163/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 35504 TTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAA 35563 || ||||| || | || || | |||||||| | ||| || || || || |||||| Sbjct 52149 TTCTTTCCTCCCCTCAATCTAAGAACCAAATGAAGTGTAGATTCTTTCTGGATATTGTAA 52090 Query 35564 TCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCC 35623 || ||| |||| | || |||| || ||||| ||||||||||| | || || || Sbjct 52089 TCACTCAATGTTCTACCATCTTCCAATTGTTTACCTGCAAATATCAATCTTTGTTGATCT 52030 Query 35624 GAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC-AGAGTTGCCACCGTGTCGCTCGA 35682 | ||| | | |||||||| || |||||||| | | || | | | |||| | || Sbjct 52029 GGAGGTATTCCTTCCTTGTCTTGTAT-TTTTGCTTTGACATTTTCTATGGAGTCGGTGGA 51971 Query 35683 TTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 ||| || || | ||||| || || ||||| | ||||| ||||||||||||||| Sbjct 51970 TTCGACTTCTAGTGTGATTGTCTTGCCCGTAAGCGTTTTGACAAATATCTGCATT 51916 >seq290 Length=54858 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 35503 TTTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTA 35562 || ||| ||||| | ||| || || || ||||| |||||| ||||| || || || || Sbjct 33837 TTAATTACCACCTCTTAATCTTAATACTAAATGCAACGTAGATTCCTTCTGTATATTATA 33896 Query 35563 ATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTC 35622 |||| || |||| | || || ||||| || || ||||||||||| | ||| || || Sbjct 33897 ATCGCTTAATGTTCTACCATCCTCGAGCTGTTTTCCTGCAAATATCAATCTCTGTTGATC 33956 Query 35623 CGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGA 35682 | ||| | | || || ||| ||||| ||| | | || | | || || Sbjct 33957 TGGAGGTATTCCTTCTTTATCCTGTATCTTAGCCTTTACATTTTCTATAGTATCAGAATT 34016 Query 35683 TTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| || || | || || ||||| || || | |||||| ||||| |||||||| Sbjct 34017 TTCTACTTCAAGAGTAATTGTTTTTCCTGTGAGAGTTTTAACAAAGATCTGCAT 34070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450791402381200