Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887935.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq24 288 8e-73 seq390 105 5e-18 seq5 100 2e-16 >seq24 Length=118493 Score = 288 bits (318), Expect = 8e-73 Identities = 605/891 (68%), Gaps = 22/891 (2%) Strand=Plus/Minus Query 43696 TAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACA 43755 ||| ||||| |||||||||| |||| || |||||| | | || || | |||| Sbjct 56602 TAGATTTGTTTTGTTTCCAATAAAATACGATCGTATATGGGATTTATATAAGCAGGCACT 56543 Query 43756 GGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGC 43815 | || |||||||| || |||||||| ||||| |||| || |||| |||||| || Sbjct 56542 TTCATCGTTTTGGACTGCTGAAGAAGTAGATTTATCTAATGATTTAGACGATTGGAATGG 56483 Query 43816 ATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGA 43875 | || | |||| |||||||||| || || ||||| |||||||| || || Sbjct 56482 TCTTAATGATGATGAAAGACATTTTATAAGTTATGTGTTGGCATTTTTTGCAGCATCAGA 56423 Query 43876 CGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT-GCGCAAGAAGTTCAATTACCAGAAG 43934 ||||| || ||||||||| | |||| ||| || |||||||| ||||||||| Sbjct 56422 TGGGATTGTTAATGAAAATCTT-TTAGAAAATTTTGCAGCGGAAGTTCAGATACCAGAAG 56364 Query 43935 CACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTC 43994 | ||||| ||||||| || ||||| ||||||||||| ||||| || |||||| Sbjct 56363 CTAGATGTGTTTATGGATTCCAAATAATGATAGAAAATATACATTCTGAGATGTACTCAT 56304 Query 43995 TTCTGATAGATACGTACATCAAAGATGGGCACGAG---AAGCATCGATTGTTTAATGCGA 44051 | || ||||| || || || | ||| || ||| || || || ||||| || | Sbjct 56303 TGCTAATAGAAACATATATTAGAGA---ACAAGAGAAAAAAGATTTTTTATTTAACGCAA 56247 Query 44052 TAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAA---ATT 44108 | ||| |||| | |||||| |||||||||||||| | | |||||||||| || Sbjct 56246 TTTCTACAATACCAACAATTAAAAATAAAGCAGACTGGACTATGAAATGGATAACGGATA 56187 Query 44109 CAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTT 44168 ||| | ||||| | || | | || ||||| || ||||| |||||||| | Sbjct 56186 AAAAATCATGTTTTGCTACAAGAATAATTGCATTTGCGTGCGTAGAAGGTATTTTCTTCT 56127 Query 44169 CAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGT 44228 | ||||| ||||| ||||||| ||| | || ||||| || || ||||| || | || | Sbjct 56126 CTGGATCTTTTGCATCCATATTCTGGCTTAAAAAACGTGGATTAATGCCAGGTCTTACTT 56067 Query 44229 TTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTAC 44288 | || ||||| ||||| ||| | |||||||| | ||| || ||||| || | ||| Sbjct 56066 TCTCCAATGAATTAATCAGTAGAGATGAAGGAGTGCATGTTGAATTTGCATGTCTCTTAA 56007 Query 44289 TTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGG 44348 || | ||| ||| | ||| | ||| | | ||| | | || || ||| ||| | Sbjct 56006 ATGCTCACTTAGAAGA--AAAAG-CACCATATGAAACAGTAATCGAAATAGTTAAAGAAG 55950 Query 44349 CAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGA 44408 ||||| || |||||||||||| | | | |||| |||| |||||| ||||||| Sbjct 55949 CAGTAGCAATTGAACAAGAATTTGTTTCTGAAAGTCTACCCGTAAGTTTAATTGGAATGA 55890 Query 44409 A-TGAACTTTTGATGAACCAATATATTGAATACATTGCAG---ATCGTTTACTTTTGGAA 44464 | || | | | ||| | || || |||| | || | ||| ||| || || Sbjct 55889 ACTGTAAATCT-ATGTGTAATTACATAGAATTTGTGGCTGACAATCTCTTAGTT---GAT 55834 Query 44465 CTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCG 44524 || || | | |||||| || | |||| || |||||||| ||||||||||| || Sbjct 55833 CTAGGATTCTCTAAACATTACAACACTGAAAATCCATTTGATTTCATGGAAAATATATCT 55774 Query 44525 TTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGA 44575 || |||| ||||| || || ||||||||| | || | |||||| ||| || Sbjct 55773 TTACAAGGAAAAACCAATTTCTTTGAAAAAAGAGTCGCAGAATACCAGAGA 55723 >seq390 Length=4512 Score = 105 bits (116), Expect = 5e-18 Identities = 181/263 (69%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 41049 ATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCA 41108 ||||| | ||||| ||||||| |||| ||| ||||| || || | || | Sbjct 84 ATGGCTCTTCCACCATGTCATTGTTTATTTCAATTTTATGTCGCTGATAATAAATTAAGT 143 Query 41109 TGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGT 41168 |||| || ||||||||||| ||||| |||||| | || || || ||||| || || ||| Sbjct 144 TGTCTTTTATATCAAAGATCCGGTGATATGGGATTGGGAGTACCTTTTAATATTGCTAGT 203 Query 41169 TATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTT 41228 ||| | || || | | ||| | ||| | ||||| ||| |||| ||||||||| | Sbjct 204 TATTCACTTCTTGCTTTAATGGTGGCAAAAGTTACTGGATTAGAACCAGGTGAATTTATC 263 Query 41229 CACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACTG 41288 || | ||||| |||| ||| | || |||||||| ||||| ||| | | ||||| Sbjct 264 CATTCTTTAGGTGATGTTCATTTATATGAGAATCACATTGAGCCAATAAAAAAGCAACTT 323 Query 41289 ACACGAAAACCTAGACCATTTCC 41311 | ||| |||| ||||| || Sbjct 324 GAAAGAACACCTTATCCATTCCC 346 >seq5 Length=4344 Score = 100 bits (110), Expect = 2e-16 Identities = 182/264 (69%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 41049 ATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCA-ATGGTGAACTGTC 41107 ||||| | ||||| ||||||| |||| ||| ||||| || ||| || || | Sbjct 84 ATGGCTCTTCCACCATGTCATTGTTTATTTCAATTTTATGTC-GCAGATAACAAATTAAG 142 Query 41108 ATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAG 41167 |||| || ||||||||||| ||||| |||||| | || || || ||||| || || || Sbjct 143 TTGTCTTTTATATCAAAGATCTGGTGATATGGGATTGGGAGTACCTTTTAATATTGCTAG 202 Query 41168 TTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGT 41227 |||| | || || | | ||| | ||| | ||||| ||| |||| ||||||||| | Sbjct 203 TTATTCCCTTCTTGCTTTAATGGTGGCAAAGGTTACTGGATTAGAACCAGGTGAATTTAT 262 Query 41228 TCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACT 41287 || | |||||||||| ||| | || |||||||| || || ||| | | ||| | Sbjct 263 CCATTCTTTAGGAGATGTTCATTTATATGAGAATCACATCGAACCAATAAAAAAGCAATT 322 Query 41288 GACACGAAAACCTAGACCATTTCC 41311 | ||| |||| ||||| || Sbjct 323 AGAAAGAACACCTTATCCATTCCC 346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397454110841950