Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887935.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq246 116 2e-21 >seq246 Length=60991 Score = 116 bits (128), Expect = 2e-21 Identities = 271/400 (68%), Gaps = 18/400 (5%) Strand=Plus/Minus Query 65751 AAACAAATTAATACACAACCCTTTAATATGATGACCATCCAAATCCGCGTCTGTCATAAT 65810 ||| |||||||| |||| ||||| ||||| |||||| ||| || |||||||| Sbjct 12054 AAAGAAATTAATCAACAATCCTTTGATATGGGAACCATCATGATCTTGATCCGTCATAAT 11995 Query 65811 AAGAACACGACCATATCTCAAATCATTTGTATCACTGTATTCACGACCAGTTTCCAAACC 65870 | || | | |||||||| ||||| ||| ||| ||||||| ||| || || || Sbjct 11994 TATAATATGCCCATATCTTAAATCTTTTACATCTTTGTATTCTTTACCTTGTTTTAATCC 11935 Query 65871 AAGTAtttttttAAT-TTCAGCAATTTCCTTGTTTTCACTAATCTTTTTG----ATGTTT 65925 | |||||||||||| || | ||||| | || ||||| |||||| |||| | | || Sbjct 11934 TATTATTTTTTTAATATTTATCAATT-CTTTATTTTCCATAATCTGTTTGTGAGAAGCTT 11876 Query 65926 TCACCACGCACATTTAATATTTTCCCCTTCATTGGATATACACCATAAGAATTTCTATCT 65985 | || |||||||| | ||| || |||| ||| ||||||||||| || | | || Sbjct 11875 ----CTCGTACATTTAAAAGTTTACCTTTCAAAGGAAATACACCATAATGATCTTTTCCT 11820 Query 65986 TCTGAAGA--GAGACCAGAAACAATACCGGCTTTTGCGGAATCTCCTTCACAAAAGATAA 66043 | |||| | ||| || | || | | || || ||||||||||| || || | Sbjct 11819 AC--AAGACCTATACCTGACATAACAAATGTCTTAGCTGAATCTCCTTCTGTTAAAATTA 11762 Query 66044 TAGTGCATTCAGATGAACGTTCAGTTCCTGCCCAATTGGCATCAATCAATTTTGGAAT-T 66102 || ||||| | ||| |||||||||| | || ||||| || ||| ||| | Sbjct 11761 AAGAGCATTTGTAAGAATCAACAGTTCCTGCTCTGTTAGCATCTTCTAACTTTTCAATAT 11702 Query 66103 CCACGGATATTTTTC-GTTTTAGTTCCATCCGtttttttt 66141 ||| |||| | | |||||| |||||||||||| || Sbjct 11701 CCA--AATATCTAACATTTTTAGAACCATCCGTTTTTGTT 11664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235678879783500