Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887935.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq370 392 4e-104 seq24 313 3e-80 >seq370 Length=149473 Score = 392 bits (434), Expect = 4e-104 Identities = 1073/1616 (66%), Gaps = 52/1616 (3%) Strand=Plus/Minus Query 77026 TATTTTGAATGGAACCACCAT-CTGATATAATTGTATTCTTTATATCATCATTCCACAAT 77084 ||| ||| || |||||| | | |||| || | | || ||||| || | |||||| | Sbjct 55816 TATCTTGGATAGAACCATCGTTCTGAACTACTAGGTTT-TTTATTTCTTTATTCCAGAGA 55758 Query 77085 TTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAAT 77144 || | | |||| || ||| | || || ||| || | |||||| ||||||| || Sbjct 55757 TTAAGTTTTAGTAAATCTTTAATTAAATAAGAATTTACAACTTGAAAATCTCCAGCTAAA 55698 Query 77145 ACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATT 77204 ||| | || |||||||| || | ||||| | | ||||||| ||||||||| Sbjct 55697 GTTCTTCTGGTATAAATATTTGAAGTTAAAGGTTCTATACATTCATTAAAACCCAAAATT 55638 Query 77205 TGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTT 77264 || | ||||| || || |||||| || || ||||| |||||| | ||||| || Sbjct 55637 TGGGATGTAGATGCTGTAGGCATAACAGCAACAAATAATGAATTTCTAACTCCATGCTTT 55578 Query 77265 CTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGA 77324 ||||||| ||| | | | | |||||| | | ||||| || | | | | Sbjct 55577 TTGATTTTTTCTCTCAAAATATCCCAATCTAATAAATCTGTTGGGGTGGTTTTATACATA 55518 Query 77325 TCGTATTGTAGAATTCCGTTACTAGCATATG---ATCCATTATATGTTTCATAAGGTCCT 77381 || | |||| | || | ||| || ||| |||| | ||||||||| |||| || Sbjct 55517 TCAAAATGTAATAGACCCTGACT--CA-ATGGAGATCCCTCATATGTTTCGTAAGTACCA 55461 Query 77382 TCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATC 77441 | ||| |||| |||| ||| | ||||||||| |||||||| ||||||||||| Sbjct 55460 TACCGTTCTGCTAATTCAGTACTTGATTCCAATGCAGAATAATAAATAGTTTCGAAAATT 55401 Query 77442 TTCTTATTGAGATCTTGT-GCTTCAATACTATCAAACGG-ATAATGTAAAAGAATAAAGG 77499 | |||||| | || | | ||||| ||||||||| || || | || || |||||| Sbjct 55400 TGCTTATTTA-ATAATCTAGCTTCTTCACTATCAAATGGCATTCT-TAGAATAATAAATA 55343 Query 77500 CATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAG 77559 |||| |||||||| ||||| |||||||| ||||||||||||||| |||| |||||| Sbjct 55342 CATCGGCTAATCCTTGAACACCAATACCCATAGGTCTATGTCTCATATTACTTTTTTTAG 55283 Query 77560 CTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTT 77619 |||| | ||||| | | ||||||| | ||| | |||| | |||| |||| Sbjct 55282 TTTCTTCTACTGGATATTTTGTTCTGTCTATTACCCTATCCAAATTTTTTACAAGAACTT 55223 Query 77620 TAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATCTATAACAAACATGTTCAAAG 77679 | || | || |||||||| | ||||||||| | |||| ||| | | ||| ||| Sbjct 55222 TTACTATCTCTTTTAGTTTTATGAAATCAAATTTGTTATCTTTAATGA--AAGTTGGAAG 55165 Query 77680 --CTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTC 77737 |||| ||||||| ||||||||| |||| |||| || || | || | ||| || Sbjct 55164 ACCTATTGATGCTAAATTACAAACAGCTATTTCATCAGGCTTAGTTACTTCAACTATTTC 55105 Query 77738 GGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCA 77797 | ||| |||||| |||||| |||| || | ||||| ||||| | | |||| || Sbjct 55104 TGCACAAAGATTAGAACATTTTATAGATCCAATATTTTTCTGGTTAGAATATCTATTACA 55045 Query 77798 TGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTT 77857 | || ||||||| || || ||| | || ||||| || |||| ||| || || | ||| Sbjct 55044 CGTATCTTTATAAATTATGAAAGGATTACCTGTTTCTATTTGTGTTTCAATTATCGTTTT 54985 Query 77858 CCAGACGACTCTAGCTTTTATCATAGATTTGTATCGCC--TC--TCTCTTTCATATTGAG 77913 ||| | | |||||||| || || ||| ||| || | | |||||||| Sbjct 54984 CCAAAGATGTTGAGCTTTTA-CA---GTTCTTATTGCCAATCCTTTTGCTTCATATTCTT 54929 Query 77914 TATATAGCCGTTCAAA---TTCA-----TCTCCCCAAACATCATCCAATCCAGGGCATTC 77965 ||| || | |||| |||| | || || ||| || |||| | Sbjct 54928 CATAAAGTTTTACAAACTCTTCATTGTGTTTCTCC---CAT-----AAATCAGGTGCTGT 54877 Query 77966 ATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGG 78025 || | | | | |||||| || || ||| | |||| |||||| || | ||| || Sbjct 54876 ATCCGCAGAAAAAAGTGACCAATCTTTATTTTCTTCGACTCTTTTCATGAATAAATCTGG 54817 Query 78026 TATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTT 78085 || ||| || | | ||||| ||||| ||||| ||| || ||||| ||||||| | Sbjct 54816 TACCCAAAGTCCTAAAAATAAATCTCTTGTTCTTACTTCGTCTTTTCCAACATTCTTTCT 54757 Query 78086 AAGATCGAGAAACTCCATA-ATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTC 78144 | || | ||| | |||| || || |||||||||||||| |||| |||||| | | Sbjct 54756 TAATTCTA-AAAATTCATAGATTTCTACATGCCATGGTTCTATGTATACTGCCATTGCAC 54698 Query 78145 CAGGTCGTTTATTACCTCCCTGATCTATATA-TCTGGCGGTGTTATTATAAACTCTCAAC 78203 |||||| || || ||||| |||| || ||| | || | || | | | | | | | | Sbjct 54697 CAGGTCTCTTTTTTCCTCCTTGATTTACATACTTTGTTGTTGCT-TCAAATGTTTTAAGC 54639 Query 78204 ATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGA---AATATAACTTCCACTTGCG 78260 || || | || ||| ||| ||||| ||| ||| || | ||| |||| Sbjct 54638 ATAGGTACAACTCCGAGTGATCTTCCACCTGT---AGATTTTATTGTAGATCCTTTTGCT 54582 Query 78261 CGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGT 78320 | | |||| ||| || |||| |||||||| | |||||||| ||||| || | Sbjct 54581 CTCACATTATGAATATTAATTCCTAGACCTCCTGCACTTTTAGATATAAGAGCACAGTTT 54522 Query 78321 TTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 |||| |||||| | ||||| |||||| || || | || | | ||||||||| | Sbjct 54521 TTCACAGTATCGAATATACCTTCTATAGAATCCTCTTTGATATCCAAAAGAAAACATGAA 54462 Query 78381 GACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCAT 78440 || ||||| || ||||| | |||||| ||||| || | ||| || |||| || Sbjct 54461 CTCAATTGATTATTCTTTGTTCCGGAATTAAACAATGTAGGTGTTGCGTGAATAAAATAT 54402 Query 78441 TTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCT 78500 |||| ||| | || ||| || || | | || ||||| || | ||||||| || Sbjct 54401 TTTTTAGACATTAAATTATACGTCTGTAACGCATCATCTATTTCTTCATCATGAATTTCT 54342 Query 78501 ACCGCTACACGCATCAACATATGCTGAGGTCTTTCA-ACCGTCTTATTATTTATTTTCAA 78559 | ||||||||||| || | || ||| ||||||||| ||| | ||| || |||| || Sbjct 54341 AAGGCTACACGCATAAAAACATCCTGTGGTCTTTCATACCAT-AAATTTTTATTTTTTAA 54283 Query 78560 CAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCT 78615 ||| || ||| ||| ||||||||| | |||||||| || | | ||| ||||||| Sbjct 54282 CAAATACGATCTTTGCAAAGTTTTCACCCCAAAATAATTTAAAGTAAAATCTCTCT 54227 >seq24 Length=118493 Score = 313 bits (346), Expect = 3e-80 Identities = 614/892 (69%), Gaps = 33/892 (4%) Strand=Plus/Plus Query 47853 TGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCC 47912 || ||||| | || | ||| || || ||||| ||||| |||| || |||||||||||| Sbjct 55727 TGGTATTCTGCGACTCTTTTTTCAAAGAAATTGGTTTTTCCTTGTAAAGATATATTTTCC 55786 Query 47913 ATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCAGT 47972 || |||||||||||||| | | || ||| ||| ||||||| || | || Sbjct 55787 ATGAAATCAAATGGATTTTCAGTGTTGTAATGTTTAGAGAATCCTAGATCAACTAAGAGA 55846 Query 47973 CTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 48032 | || || || |||||||| || | ||| || ||| |||||||| || | | Sbjct 55847 TTGTCAGCCACAAATTCTATGTAATTACACATAGATTTACAGTTCATTCCAATTAAACTT 55906 Query 48033 ACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCC---ACTATTATC 48089 || |||||| || | || ||| |||||||| || | || || || |||||| || Sbjct 55907 ACGGGTAGACTTTCAGAAACAAATTCTTGTTCAATTGCTACTGCTTCTTTAACTATT-TC 55965 Query 48090 GATGTTACCGTTTCCTCACTTGGTGGATA--CAACAAATGTTTAAACATTAAA----CAT 48143 ||| ||| ||||| | ||||| | | | || | | |||| || ||| Sbjct 55966 GAT--TACTGTTTCATA---TGGTGCTTTTTCTTCTAAG---TGAGCATTTAAGAGACAT 56017 Query 48144 GCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCG 48203 ||||| ||| ||| | |||||||||||||| |||||||| || || || || ||||| Sbjct 56018 GCAAATTCAACATGCACTCCTTCATCTCTACTGATTAATTCATTGGAGAAAGTAAGACCT 56077 Query 48204 GGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATG 48263 ||||||| |||||||||||| ||||| ||||| | || ||||||||||| ||||| || Sbjct 56078 GGCATTAATCCACGTTTTTTAAGCCAGAATATGGATGCAAAAGATCCAGAGAAGAAAATA 56137 Query 48264 CCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTG---TATC 48320 ||||||||| ||||||||| | | ||| | ||| | || || | |||| Sbjct 56138 CCTTCTACGCACGCAAATGCAATTATTCTTGTAGCAAAACATGATTTTTTATCCGTTATC 56197 Query 48321 CAC--CGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 48378 || | | || ||| || || || || || | || ||||| || || |||| Sbjct 56198 CATTTCATAGT--CCAGTCTGCTTTATTTTTAATTGTTGGTATTGTAGAAATTGCGTTAA 56255 Query 48379 AGAGAAAGt-ttttttCATTGCTATCTTTAACGTAAGTATCTATTA--AAAGACTATACA 48435 | | ||| | ||||||| | | ||| ||| || || ||||||| || || || || Sbjct 56256 ATAAAAAATCTTTTTTCTCTTGT-TCTCTAATATATGTTTCTATTAGCAATGAGTA--CA 56312 Query 48436 TTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGA 48495 | || || || |||||||| || || || ||||| |||| |||||| ||||||| | Sbjct 56313 TCTCAGAATGTATATTTTCTATCATTATTTGGAATCCATAAACACATCTAGCTTCTGGTA 56372 Query 48496 TCTGTACCTCCG-TACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCA 48554 |||| || |||| | |||||| ||| | ||| ||||| || || ||||| || Sbjct 56373 TCTGAACTTCCGCTGCAAAATT-TTCTAAAAGATTTTCATTAACAATCCCATCTGATGCT 56431 Query 48555 GCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAG 48614 ||||||||||| || |||| | ||||||| | |||| | | | || |||||| Sbjct 56432 GCAAAAAATGCCAACACATAACTTATAAAATGTCTTTCATCATCATTAAGACCATTCCAA 56491 Query 48615 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTT 48674 || | | ||| || |||| ||||||||||||||| |||||||| |||| ||| | Sbjct 56492 TCGTCTAAATCATTAGATAAATCTACTTCTTCAGCAGTCCAAAACGATGAAAGTGCCTGC 56551 Query 48675 TTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTAT 48726 ||||| | || ||||||| | ||||| ||||| || | ||||||||||| Sbjct 56552 TTATATAAATCCCATATACGATCGTATTTTATTGGAAACAAAACAAATCTAT 56603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694665413489600