Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887935.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq157 114 3e-20 seq290 107 4e-18 >seq157 Length=84007 Score = 114 bits (126), Expect = 3e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| | ||| || || | |||||| ||||| ||||| ||||| |||||||| || || Sbjct 52138 CCTCAATCTAAGAACCAAATGAAGTGTAGATTCTTTCTGGATATTGTAATCACTCAATGT 52079 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 ||| |||||||| | ||| || || || || | || || || || | | ||||| Sbjct 52078 TCTACCATCTTCCAATTGTTTACCTGCAAATATCAATCTTTGTTGATCTGGAGGTATTCC 52019 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 |||||| ||||| |||||| ||||||| | |||| | ||| | || ||||| || Sbjct 52018 TTCCTTGTCTTGTATTTTTGCTTTGACATTTTCTATGGAGTCGGTGGATTCGACTTCTAG 51959 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || |||||||| || || || || || | ||||||| Sbjct 51958 TGTGATTGTCTTGCCCGTAAGCGTTTTGACAAATATCTGCATT 51916 >seq290 Length=54858 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 ||||| || || || || || |||||| ||| ||||| ||||| || || ||| || Sbjct 33874 GTAGATTCCTTCTGTATATTATAATCGCTTAATGTTCTACCATCCTCGAGCTGTTTTCCT 33933 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || || || | ||||| || || | | |||||||| || || || || || || Sbjct 33934 GCAAATATCAATCTCTGTTGATCTGGAGGTATTCCTTCTTTATCCTGTATCTTAGCCTTT 33993 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | |||| | || ||| | ||||||||||||||||| ||||| || |||||||| Sbjct 33994 ACATTTTCTATAGTATCAGAATTTTCTACTTCAAGAGTAATTGTTTTTCCTGTGAGAGTT 34053 Query 152088 TTCACGAAGACCTGCAT 152104 || || |||| |||||| Sbjct 34054 TTAACAAAGATCTGCAT 34070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153815034501690