Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887935.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq24 318 6e-82 >seq24 Length=118493 Score = 318 bits (352), Expect = 6e-82 Identities = 609/887 (69%), Gaps = 18/887 (2%) Strand=Plus/Plus Query 23221 TGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATTTTCC 23280 || ||||| | || | | |||| || ||||| || || || | ||| |||||||||||| Sbjct 55727 TGGTATTCTGCGACTCTTTTTTCAAAGAAATTGGTTTTTCCTTGTAAAGATATATTTTCC 55786 Query 23281 ATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGATAAT---TCCTTTAAA 23337 || |||||||||||||| ||| || || | |||| | || | || ||| Sbjct 55787 ATGAAATCAAATGGATTTTCAGTGTTGTA---ATGTTTAGAGAATCCTAGATCAACTAAG 55843 Query 23338 AGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATTAGT 23397 || | || || |||||||| || || | |||||| | | | |||| || || |||| Sbjct 55844 AGATTGTCAGCCACAAATTCTATGTAATTACACATAGATTTACAGTTCATTCCAATTAAA 55903 Query 23398 TTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTATT 23457 |||| || | ||| | | ||| || |||||| | || || ||||||| |||| Sbjct 55904 CTTACGGGTAGACTTTCAGAAACAAATTCTTGTTCAATTGCTACTGCTTCTTTAACTATT 55963 Query 23458 TGAACAATAACTTCTTCACTAGGTGGATATTTT---AAATACTTAAACAATAAACATGCA 23514 | | || ||| |||| |||| | || | || | | || | ||||||| Sbjct 55964 T---CGATTACTGTTTCATATGGTGCTTTTTCTTCTAAGTGAGCATTTAAGAGACATGCA 56020 Query 23515 AAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGC 23574 || ||| ||| | |||||||| ||||| || |||||||| || || || | |||||| Sbjct 56021 AATTCAACATGCACTCCTTCATCTCTACTGATTAATTCATTGGAGAAAGTAAGACCTGGC 56080 Query 23575 ATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCC 23634 |||||||| |||||||||| ||| ||||| | ||||| ||||| || ||||||||||| Sbjct 56081 ATTAATCCACGTTTTTTAAGCCAGAATATGGATGCAAAAGATCCAGAGAAGAAAATACCT 56140 Query 23635 TCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAt 23694 || || |||||| || | | | |||| |||| || || | ||| | |||||| Sbjct 56141 TCTACGCACGCAAATGCAATTATTCTTGTAGCAAAACATGATTTTTTATCCGTTATCCAT 56200 Query 23695 ttttttGTCCAATTAGCCTTCAATTTTACACACT-CAATTGTTTCAATTGCTTTTAAGAG 23753 || | ||||| | | ||| | ||||| | ||||| |||||| || || | Sbjct 56201 TTCATAGTCCAGTCTG-CTTTATTTTTAATTGTTGGTATTGTAGAAATTGCGTTAAATAA 56259 Query 23754 AAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGA 23813 |||| ||||| || | ||| | |||||||| || ||||| || ||||| ||||| Sbjct 56260 AAAATCTTTTTTCTCTTGTTCTCTAATATATGTTTCTATTAGCAATGAGTACATCTCAGA 56319 Query 23814 ATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAAC 23873 ||| |||||||| || || || || ||||||| |||||||||||| | | ||||| Sbjct 56320 ATGTATATTTTCTATCATTATTTGGAATCCATAAACACATCTAGCTTCTGGTATCTGAAC 56379 Query 23874 AT-CATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGA 23932 | | | ||||| || || | |||||| |||||||| ||||| || ||||| | Sbjct 56380 TTCCGCTGCAAAATTTTCTA-AAAGATTTTCATTAACAATCCCATCTGATGCTGCAAAAA 56438 Query 23933 AAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAA-TTTTTTCCAATCATTA 23991 | || | ||||| |||||||||||||||||||| | ||| |||||||| | Sbjct 56439 ATGCCAACACATAACTTATAAAATGTCTTTCATCA-TCATTAAGACCATTCCAATCGTCT 56497 Query 23992 ATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGCTTATAC 24051 | ||| || |||||||| ||||| ||| | |||||||| || | || ||||||| Sbjct 56498 AAATCATTAGATAAATCTACTTCTTCAGCAGTCCAAAACGATGAAAGTGCCTGCTTATAT 56557 Query 24052 ATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAATCTATC 24098 | ||| ||| || | || ||||||||| | || |||||||| Sbjct 56558 AAATCCCATATACGATCGTATTTTATTGGAAACAAAACAAATCTATC 56604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521485457746000