Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887945.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq24 282 4e-71 >seq24 Length=118493 Score = 282 bits (312), Expect = 4e-71 Identities = 607/897 (68%), Gaps = 28/897 (3%) Strand=Plus/Plus Query 15910 TCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATT 15969 ||| ||||| || || | |||||| ||||| || |||||||| | |||||||||||| Sbjct 55723 TCTCTGGTATTCTGCGACTCTTTTTTCAAAGAAATTGGTTTTTCCTTGTAAAGATATATT 55782 Query 15970 TTCCATAAAATCAAAGGGATT---AGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGT 16026 |||||| |||||||| ||||| ||| | || ||| | |||||| | || || || Sbjct 55783 TTCCATGAAATCAAATGGATTTTCAGT-GTTG-TAATGT-TTAGAGAATCCTAGATC--- 55836 Query 16027 AACTAA---TCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCC 16083 |||||| | || || ||||||||||| || | |||||| | | || || ||||| Sbjct 55837 AACTAAGAGATTGTCAGCCACAAATTCTATGTAATTACACATAGATTTACAGTTCATTCC 55896 Query 16084 TATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTT 16143 || | | ||| || ||| || | | ||||| |||||| || | || |||||||| Sbjct 55897 AATTAAACTTACGGGTAGACTTTCAGAAACAAATTCTTGTTCAATTGCTACTGCTTCTTT 55956 Query 16144 AATGATATCGGTGGCTCGTGTTTCAGACGGTG---TATGGTTTAGGTG----TTTAAACA 16196 || || ||| | | ||||||| | |||| | | | || ||| ||||| Sbjct 55957 AACTATTTCGAT---TACTGTTTCATATGGTGCTTTTTCTTCTAAGTGAGCATTTAA--- 56010 Query 16197 TTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAG 16256 ||||| || || || ||| | |||||| ||||| ||||| | ||| ||||| |||| Sbjct 56011 -GAGACATGCAAATTCAACATGCACTCCTTCATCTCTACTGATTAATTCATTGGAGAAAG 56069 Query 16257 TTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAA 16316 | | ||||||||| ||| ||||| || | ||||||||| | ||||| || || || | Sbjct 56070 TAAGACCTGGCATTAATCCACGTTTTTTAAGCCAGAATATGGATGCAAAAGATCCAGAGA 56129 Query 16317 AGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTAT 16376 |||| ||||| || || | ||||| || |||| || | || | | | ||||| Sbjct 56130 AGAAAATACCTTCTACGCACGCAAATGCAATTATTCTTGTAGCAAAACATGATTTTTTAT 56189 Query 16377 TACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGG 16436 ||||||||| ||| || ||||| | ||| || || || || | Sbjct 56190 CCGTTATCCATTTCATAGTCCAGTCTGCTTTATTTTTAATTGTTGGTATTGTAGAAATTG 56249 Query 16437 CCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGT 16496 | ||||| || ||||||| || || | ||||| || || || || || || Sbjct 56250 CGTTAAATAAAAAATCTTTTTTCTCTTGTTCTCTAATATATGTTTCTATTAGCAATGAGT 56309 Query 16497 ACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCG 16556 |||| || || ||||| || ||||| ||| || |||||||| | |||| ||| || | Sbjct 56310 ACATCTCAGAATGTATATTTTCTATCATTATTTGGAATCCATAAACACATCTAGCTTCTG 56369 Query 16557 CTATTTGTACTTCCAC-GTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTT 16615 ||| || |||||| | | ||||| ||| || || ||||| || || || || | Sbjct 56370 GTATCTGAACTTCCGCTGCAAAAT-TTTCTAAAAGATTTTCATTAACAATCCCATCTGAT 56428 Query 16616 GCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGC 16675 || |||||||| ||||| | | | || |||| | |||| ||| ||||| || | Sbjct 56429 GCTGCAAAAAATGCCAACACATAACTTATAAAATGTCTTTCATCATCATTAAGACCATTC 56488 Query 16676 CAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCC 16735 ||||| | |||||| || |||| ||| |||||||| | |||||||| | | |||| Sbjct 56489 CAATCGTCTAAATCATTAGATAAATCTACTTCTTCAGCAGTCCAAAACGATGAAAGTGCC 56548 Query 16736 TTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGACGTATCTATCT 16792 | ||||| | | ||| ||| || ||||| ||| ||||| | || |||||||| Sbjct 56549 TGCTTATATAAATCCCATATACGATCGTATTTTATTGGAAACAAAACAAATCTATCT 56605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511411906854800