Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887945.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq24 307 1e-78 seq370 239 5e-58 >seq24 Length=118493 Score = 307 bits (340), Expect = 1e-78 Identities = 610/888 (69%), Gaps = 25/888 (3%) Strand=Plus/Plus Query 23847 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCC 23906 |||||||| | || | |||||| || ||||| ||||| |||| ||| |||||||||||| Sbjct 55727 TGGTATTCTGCGACTCTTTTTTCAAAGAAATTGGTTTTTCCTTGTAAAGATATATTTTCC 55786 Query 23907 ATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTA-AATCCCAATTCAGAAATCAA 23965 |||||||| ||||||| | || || || || | ||||| | ||| | | Sbjct 55787 ATGAAATCAAATGGATTTTCAGTGTTGTA-ATGTTTAGAGAATCCTAGATCAACTAAGAG 55845 Query 23966 TCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 24025 | || || ||||| || || || | ||| || ||| |||||||| || | | Sbjct 55846 ATTGTCAGCCACAAATTCTATGTAATTACACATAGATTTACAGTTCATTCCAATTAAACT 55905 Query 24026 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGA 24085 || || ||| ||| || ||||||||||||||| | || || ||| ||| | || Sbjct 55906 TACGGGTAGACTTTCAGAAACAAATTCTTGTTCAATTGCTACTGCTTCT-TTA-ACTATT 55963 Query 24086 TC--TTACTGTTTCTTCACTCGGTGGATACAATAAATG----TTTAAACATCAAACATGC 24139 || |||||||||| | | | | ||| || ||||| | |||||| Sbjct 55964 TCGATTACTGTTTCATATGGTGCTTTTTCTTCTAAGTGAGCATTTAAG----AGACATGC 56019 Query 24140 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 24199 || || || | || || |||||||| |||||||| ||||| || || || || || Sbjct 56020 AAATTCAACATGCACTCCTTCATCTCTACTGATTAATTCATTGGAGAAAGTAAGACCTGG 56079 Query 24200 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCC 24259 ||||| ||||| ||||||||||| |||||||| ||||| |||||||| |||||||| || Sbjct 56080 CATTAATCCACGTTTTTTAAGCCAGAATATGGATGCAAAAGATCCAGAGAAGAAAATACC 56139 Query 24260 TTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCAT---GTATCCA 24316 |||||| |||||| ||||| | |||| || ||| | | | || |||||| Sbjct 56140 TTCTACGCACGCAAATGCAATTATTCTTGTAGCAAAACATGATTTTTTATCCGTTATCCA 56199 Query 24317 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 24376 || || ||| || || || ||||| | || ||||| || || ||||| | Sbjct 56200 TTTCATAGTCCAGTCTGCTTTATTTTTAATTGTTGGTATTGTAGAAATTGCGTTAAATAA 56259 Query 24377 ATAGt-ttttttCATTACTATCTTTAACATATGTATCAATCA--AAAGACTATACATTTC 24433 | | | ||||||| | | ||| ||| |||||| || || | || || ||||| || Sbjct 56260 AAAATCTTTTTTCTCTTGT-TCTCTAATATATGTTTCTATTAGCAATGA--GTACATCTC 56316 Query 24434 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 24493 ||||| || ||||| || ||||| ||||| || | ||||||||| || | ||||| Sbjct 56317 AGAATGTATATTTTCTATCATTATTTGGAATCCATAAACACATCTAGCTTCTGGTATCTG 56376 Query 24494 TACTT-CTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 24552 |||| | | |||||| |||| | ||||||||| || || || || ||||||| Sbjct 56377 AACTTCCGCTGCAAAAT-TTTCTAAAAGATTTTCATTAACAATCCCATCTGATGCTGCAA 56435 Query 24553 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCAT 24612 |||| ||||| |||| ||||||||| | |||| || | || ||||||||| | Sbjct 56436 AAAATGCCAACACATAACTTATAAAATGTCTTTCATCATCATTAAGACCATTCCAATCGT 56495 Query 24613 TGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 24672 | ||| ||||||| ||| |||||||| | |||||||| |||| ||||| |||| Sbjct 56496 CTAAATCATTAGATAAATCTACTTCTTCAGCAGTCCAAAACGATGAAAGTGCCTGCTTAT 56555 Query 24673 ACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTAT 24720 | | || ||| || || |||| |||||||| | ||||||||||| Sbjct 56556 ATAAATCCCATATACGATCGTATTTTATTGGAAACAAAACAAATCTAT 56603 >seq370 Length=149473 Score = 239 bits (264), Expect = 5e-58 Identities = 983/1537 (64%), Gaps = 40/1537 (3%) Strand=Plus/Minus Query 53122 TAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGT 53181 |||| || ||| | || | ||| || |||||||| ||||||| || ||| | || Sbjct 55746 TAAATCTTTAATTAAATAAGAATTTACAACTTGAAAATCTCCAGCTAAAGTTCTTCTGGT 55687 Query 53182 GTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGA 53241 |||||||| || | ||||| | | | |||||| ||||||||||| | || || Sbjct 55686 ATAAATATTTGAAGTTAAAGGTTCTATACATTCATTAAAACCCAAAATTTGGGATGTAGA 55627 Query 53242 TGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATC 53301 ||| || |||||| || || ||||| |||||||| || | || ||||||| || Sbjct 55626 TGCTGTAGGCATAACAGCAACAAATAATGAATTTCTAACTCCATGCTTTTTGATTTTTTC 55567 Query 53302 TTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAG 53361 | | | | ||||||| | | ||| | || |||| Sbjct 55566 TCTCAAAATATCCCAATCTAATAAATCTGTTGGGGTGGTTTTATACATATCAAAATGTAA 55507 Query 53362 AATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAG 53421 | ||| | ||| ||||| ||||||| ||||| | || | | || |||| Sbjct 55506 TAGACCCTGACTCAATGGAGATCCCTCATATGTTTCGTAAGTACCATACCGTTCTGCTAA 55447 Query 53422 TTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATC 53481 |||| ||| | || |||||| |||||||| |||||||| || | |||||||| || Sbjct 55446 TTCAGTACTTGATTCCAATGCAGAATAATAAATAGTTTCGAAAATTTGCTTATTTA-ATA 55388 Query 53482 TTGT-GCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTT 53540 | | ||||| ||||||||||| ||| | |||||| | || |||||||||| Sbjct 55387 ATCTAGCTTCTTCACTATCAAATGGCATTCTTAGAATAATAAATACATCGGCTAATCCTT 55328 Query 53541 GAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGAT 53600 ||||||||||||| ||||||||||||||| ||||| ||| || |||| | |||| Sbjct 55327 GAACACCAATACCCATAGGTCTATGTCTCATATTACTTTTTTTAGTTTCTTCTACTGGAT 55268 Query 53601 AATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCA 53660 | | | | ||||| | ||| | ||| | |||| ||||| || | || || | Sbjct 55267 ATTTTGTTCTGTCTATTACCCTATCCAAATTTTTTACAAGAACTTTTACTATCTCTTTTA 55208 Query 53661 GTTTGAGAAAATCAAATTGTCCATCTATTACAAACATGTTCAATG--CAATAGATGCCAG 53718 |||| | |||||||||| |||| ||| | | ||| | | | || ||||| | Sbjct 55207 GTTTTATGAAATCAAATTTGTTATCT-TTA-ATGAAAGTTGGAAGACCTATTGATGCTAA 55150 Query 53719 ATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACT 53778 ||||||||| |||| |||| || | | || | ||| || | ||||||||| Sbjct 55149 ATTACAAACAGCTATTTCATCAGGCTTAGTTACTTCAACTATTTCTGCACAAAGATTAGA 55090 Query 53779 ACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAG 53838 ||| || || | ||| | ||||| || ||| | | | ||||||| ||| ||||||| Sbjct 55089 ACATTTTATAGATCCAATATTTTTCTGGTTAGAATATCTATTACACGTATCTTTATAAAT 55030 Query 53839 AATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGC 53898 ||||| || |||| ||||| || || | ||| || |||| |||||| | |||| Sbjct 55029 TATGAAAGGATTACCTGTTTCTATTTGTGTTTCAATTATCGTTTTCCAAAGATGTTGAGC 54970 Query 53899 CTTTATTATAGAT-TTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACT 53957 |||| | | ||| || ||| | ||| ||| | ||| | | | |||||| Sbjct 54969 TTTTACAGTTCTTATTGCCAATCCTTT-TGCTTCATATTCTTCATAAAGTTTTACAAACT 54911 Query 53958 C--------GTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 54009 | || || || ||| || |||| | ||||| | | | | || Sbjct 54910 CTTCATTGTGTTTCTCC---CAT-----AAATCAGGTGCTGTATCCGCAGAAAAAAGTGA 54859 Query 54010 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 54069 ||| ||| | || | |||| |||||| || | ||| || | |||||| ||| ||| Sbjct 54858 CCAATCTTTATTTTCTTCGACTCTTTTCATGAATAAATCTGGTACCCAAAGTCCTAAAAA 54799 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129 || |||||| ||||| ||| || ||||| ||||||| | | || | || ||| Sbjct 54798 TAAATCTCTTGTTCTTACTTCGTCTTTTCCAACATTCTTTCTTAATTCTA-AAAATTCAT 54740 Query 54130 A-ATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTC 54188 | || || |||||| ||||| | ||||| | ||| | ||||| | || ||||||| Sbjct 54739 AGATTTCTACATGCCATGGTTCTATGTATACTGCCATTGCACCAGGTCTCTTTTTTCCTC 54680 Query 54189 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA-CATTGGAATAATACCATTG 54247 | |||| || || | | || | || || | | || ||| || | || || Sbjct 54679 CTTGATTTACATACTTTGTTGT-TGCTTCAAATGTTTTAAGCATAGGTACAACTCCGAGT 54621 Query 54248 GATGCACCATTGGTCCCGGAGA---TATAG--CTTCCACTGGCACGAATATTACTAATTG 54302 ||| ||| || | ||| ||| | ||| | || | | |||| ||| Sbjct 54620 GATCTTCCA-----CCTGTAGATTTTATTGTAGATCCTTTTGCTCTCACATTATGAATAT 54566 Query 54303 ATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 54362 | |||| || ||||| ||||||| || | || || ||| | ||||| | | Sbjct 54565 TAATTCCTAGACCTCCTGCACTTTTAGATATAAGAGCACAGTTTTTCACAGTATCGAATA 54506 Query 54363 TGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 54422 | || |||||| ||| || | || | | |||||||| | || ||| | | Sbjct 54505 TACCTTCTATAGAATCCTCTTTGATATCCAAAAGAAAACATGAACTCAATTGATTATTCT 54446 Query 54423 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 54482 | ||||| | |||||| || ||||| | ||||| |||| |||||| ||| | || || Sbjct 54445 TTGTTCCGGAATTAAACAATGTAGGTGTTGCGTGAATAAAATATTTTTTAGACATTAAAT 54386 Query 54483 TGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTA 54542 | ||||||| | || ||||| || | ||||||| ||| || |||||||| | Sbjct 54385 TATACGTCTGTAACGCATCATCTATTTCTTCATCATGAATTTCTAAGGCTACACGCATAA 54326 Query 54543 ACATGTGCTGAGGTCTTTCA-ACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCC 54601 | | | ||| ||||||||| || || || || |||| | ||| || ||| ||| | Sbjct 54325 AAACATCCTGTGGTCTTTCATACCAT-AAATTTTTATTTTTTAACAAATACGATCTTTGC 54267 Query 54602 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 54638 |||||||| | |||||||| || | | ||| |||| Sbjct 54266 AAAGTTTTCACCCCAAAATAATTTAAAGTAAAATCTC 54230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593718705607200