Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887945.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq390 152 8e-32 seq290 152 8e-32 seq5 143 4e-29 seq157 125 1e-23 >seq390 Length=4512 Score = 152 bits (168), Expect = 8e-32 Identities = 208/286 (73%), Gaps = 6/286 (2%) Strand=Plus/Minus Query 205318 Ctttttatttttaatttt-GGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCC 205376 ||||||| ||||||||| || ||||| | ||||| | ||| | ||| ||||||| | Sbjct 365 CTTTTTAAATTTAATTTTAGGGAATGGATAAGGTGTTCTTTCAAGTTGCTTTTTTATTGG 306 Query 205377 ATTAATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTT 205436 | ||| ||||| |||||| ||| ||| ||| | | ||| ||||||||| ||||| Sbjct 305 CTCAATGTGATTCTCATATAAATGAACATCACCTAAAGAATGGATAAATTCACCTGGTTC 246 Query 205437 TAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTA-TAACTAGCAACATTAAATG 205495 ||| ||| | | ||| | ||| ||| ||| || | |||||||||| |||||| | Sbjct 245 TAATCCAGTAACTTTTGCCACCATTAAAG-CAAGAAGTGAATAACTAGCAATATTAAAAG 187 Query 205496 GTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTAT 205555 |||| || || ||||||||| | ||||||||||| | |||| | | ||||||||| Sbjct 186 GTACTCCCAATCCCATATCACCGGATCTTTGATATAAAAGACAACTTA---ATTTATTAT 130 Query 205556 TAATTACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCAT 205601 | |||| |||||| | ||||||||||| ||||| | | |||| Sbjct 129 CAGCGACATAAAATTGAAATAAACAATGACATGGTGGAAGAGCCAT 84 >seq290 Length=54858 Score = 152 bits (168), Expect = 8e-32 Identities = 176/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || ||||| ||||| || ||| | || | ||| | Sbjct 34070 ATGCAGATCTTTGTTAAAACTCTCACAGGAAAAACAATTACTCTTGAAGTAGAAAATTCT 34011 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| |||| || || || ||||||||||| ||||| || |||||| Sbjct 34010 GATACTATAGAAAATGTAAAGGCTAAGATACAGGATAAAGAAGGAATACCTCCAGATCAA 33951 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | || |||||||||||||| | |||||| || |||||||| ||||||||| Sbjct 33950 CAGAGATTGATATTTGCAGGAAAACAGCTCGAGGATGGTAGAACATTAAGCGATTATAAT 33891 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAAT 124775 || || || ||||| || |||||||| || ||| | ||| ||||||||| | ||||| Sbjct 33890 ATACAGAAGGAATCTACGTTGCATTTAGTATTAAGATTAAGAGGTGGTAATTAAAAT 33834 >seq5 Length=4344 Score = 143 bits (158), Expect = 4e-29 Identities = 206/286 (72%), Gaps = 6/286 (2%) Strand=Plus/Minus Query 205318 Ctttttatttttaatttt-GGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCC 205376 ||||||| ||||||||| || ||||| | ||||| | ||||||||| ||||||| | Sbjct 365 CTTTTTAAATTTAATTTTAGGGAATGGATAAGGTGTTCTTTCTAATTGCTTTTTTATTGG 306 Query 205377 ATTAATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTT 205436 | || ||||| |||||| ||| ||| || | | ||| ||||||||| ||||| Sbjct 305 TTCGATGTGATTCTCATATAAATGAACATCTCCTAAAGAATGGATAAATTCACCTGGTTC 246 Query 205437 TAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTA-TAACTAGCAACATTAAATG 205495 ||| ||| | | ||| | ||| ||| ||| || | |||||||||| |||||| | Sbjct 245 TAATCCAGTAACCTTTGCCACCATTAAAG-CAAGAAGGGAATAACTAGCAATATTAAAAG 187 Query 205496 GTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTAT 205555 |||| || || ||||||||| | ||||||||||| | |||| | | |||| |||| Sbjct 186 GTACTCCCAATCCCATATCACCAGATCTTTGATATAAAAGACAACTTA---ATTTGTTAT 130 Query 205556 TAATTACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCAT 205601 |||| |||||| | ||||||||||| ||||| | | |||| Sbjct 129 CTGCGACATAAAATTGAAATAAACAATGACATGGTGGAAGAGCCAT 84 >seq157 Length=84007 Score = 125 bits (138), Expect = 1e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 124537 CAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAA 124596 ||||||| |||||| | || || || || ||||| || || || |||| | ||| | | Sbjct 51915 CAATGCAGATATTTGTCAAAACGCTTACGGGCAAGACAATCACACTAGAAGTCGAATCCA 51974 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 || | || ||| | ||| ||||| ||||| || ||||| ||||| || |||| Sbjct 51975 CCGACTCCATAGAAAATGTCAAAGCAAAAATACAAGACAAGGAAGGAATACCTCCAGATC 52034 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 ||||||| | || |||||||| |||||||| || ||| || ||||||| ||||| | Sbjct 52035 AACAAAGATTGATATTTGCAGGTAAACAATTGGAAGATGGTAGAACATTGAGTGATTACA 52094 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 |||| || |||||||| || | ||||||||| Sbjct 52095 ATATCCAGAAAGAATCTACACTTCATTTGGTT 52126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755452317152000