Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887945.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq24 320 2e-82 >seq24 Length=118493 Score = 320 bits (354), Expect = 2e-82 Identities = 616/901 (68%), Gaps = 22/901 (2%) Strand=Plus/Plus Query 15959 ACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAA 16018 ||||| |||||||||||||| |||||||||| ||| || ||||||||||| |||||||| Sbjct 55739 ACTCTTTTTTCAAAGAAATTGGTTTTTCCTTGTAAAGATATATTTTCCATGAAATCAAAT 55798 Query 16019 GGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATAATCTATCCGCCACA 16078 ||||||| | || | |||| | |||| | || | || | | || |||||| Sbjct 55799 GGATTTTCAGTGTTGTAATGTTTAGAGAATCCTAGATCAACTAAGAGATTGTCAGCCACA 55858 Query 16079 AATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCT 16138 |||||||| || | ||| | | |||||||||||| ||||| | || || | | Sbjct 55859 AATTCTATGTAATTACACATAGATTTACAGTTCATTCCAATTAAACTTACGGGTAGACTT 55918 Query 16139 TCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTA 16198 || | | ||| | || ||| || || ||||| | | ||| || ||||| | Sbjct 55919 TCAGAAACAAATTCTTGTTCAATTGCTACTGCTTCTTTAACTATTTCGATTACTGTTTCA 55978 Query 16199 TTTAACGGAGGGTTTAAT---AAGTGTTTAAACATT----ATACAAGCAAAATCACAATG 16251 | | || | ||| | ||||| | |||| | ||| ||||| ||| ||| Sbjct 55979 TAT---GGTGCTTTTTCTTCTAAGTG----AGCATTTAAGAGACATGCAAATTCAACATG 56031 Query 16252 CAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCG 16311 || |||||| || ||||| ||||| || || || || |||||||||||||||| ||| || Sbjct 56032 CACTCCTTCATCTCTACTGATTAATTCATTGGAGAAAGTAAGACCTGGCATTAATCCACG 56091 Query 16312 TTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGC 16371 |||||||| ||| ||||| | ||||| || ||||| ||||| |||||||| || || Sbjct 56092 TTTTTTAAGCCAGAATATGGATGCAAAAGATCCAGAGAAGAAAATACCTTCTACGCACGC 56151 Query 16372 AAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccattttttagccca 16431 |||||||| | || | | | | |||||| ||||||||| ||| ||| Sbjct 56152 AAATGCAATTATTCTTGTAGCAAAACATGATTTTTTATCCGTTATCCATTTCATAGTCCA 56211 Query 16432 atttgctttttgtttAACACAGTTCATGTTCTCTA--TTGCATTAAATAAATAAt-tttt 16488 | |||||| | ||||| ||| | || | | |||| ||||||||| ||| |||| Sbjct 56212 GTCTGCTTTATTTTTAATT--GTTGGTATTGTAGAAATTGCGTTAAATAAAAAATCTTTT 56269 Query 16489 ttCT-TTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATAT 16547 |||| ||| | ||||| |||| || |||||||| || ||||| || ||||| |||| Sbjct 56270 TTCTCTTGTTCTCTAATATAT--GTTTCTATTAGCAATGAGTACATCTCAGAATGTATAT 56327 Query 16548 TCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGT 16607 | || || ||| || || ||||||| ||||||||||| | ||| || ||||| | Sbjct 56328 TTTCTATCATTATTTGGAATCCATAAACACATCTAGCTTCTGGTATCTGAACTTCCGCTG 56387 Query 16608 AAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTA 16667 ||| ||||| | ||||| ||||| || ||||| ||||||||||| || | | Sbjct 56388 CAAAATTTTCTAAAAGATTTTCATTAACAATCCCATCTGATGCTGCAAAAAATGCCAACA 56447 Query 16668 TGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTG 16727 | | ||||||| | |||| | ||| ||| ||| || ||||| || | Sbjct 56448 CATAACTTATAAAATGTCTTTCATCATCATTAAGACCATTCCAATCGTCTAAATCATTAG 56507 Query 16728 ATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATA 16787 ||||||| || ||||| |||||||||| || | || |||| ||||| | | ||||| Sbjct 56508 ATAAATCTACTTCTTCAGCAGTCCAAAACGATGAAAGTGCCTGCTTATATAAATCCCATA 56567 Query 16788 TGTCTTCGTAAACAATAGGAAACACAACATACTTATTTAATGTTGGTTTTAAAATAGGTT 16847 | ||||| || ||||||| |||| | ||| | |||||| | || | |||| Sbjct 56568 TACGATCGTATTTTATTGGAAACAAAACAAATCTATCTTCAGTTGGTGTCAATAGTGGTT 56627 Query 16848 C 16848 | Sbjct 56628 C 56628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462509745254000