Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887945.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq157 123 2e-23 >seq157 Length=84007 Score = 123 bits (136), Expect = 2e-23 Identities = 176/244 (72%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 18086 TTCTTTTTGTTAT--CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143 |||||||| || | ||||||| | |||||| |||| |||||||| |||||||| || Sbjct 52158 TTCTTTTTCTTCTTTCCTCCCCTCAATCTAAGAACCAAATGAAGTGTAGATTCTTTCTGG 52099 Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203 || ||||| || || |||| ||| ||||||||||||||| || ||| | || | |||| Sbjct 52098 ATATTGTAATCACTCAATGTTCTACCATCTTCCAATTGTTTACCTGCAAATATCAATCTT 52039 Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGT 18262 |||||||| || | |||||||| || |||| |||| ||||| | | | | | Sbjct 52038 TGTTGATCTGGAGGTATTCCTTCCTTGTCTTGTATTT-TTGCTTTGACATTTTCTATGGA 51980 Query 18263 GTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTG 18322 ||| || ||| ||| | ||||| | ||||| || | ||||| ||||| || || Sbjct 51979 GTCGGTGGATTCGACTTCTAGTGTGATTGTCTTGCCCGTAAGCGTTTTGACAAATATCTG 51920 Query 18323 CATT 18326 |||| Sbjct 51919 CATT 51916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379342196930550