Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887945.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq24 129 5e-25 seq157 113 4e-20 >seq24 Length=118493 Score = 129 bits (142), Expect = 5e-25 Identities = 356/543 (66%), Gaps = 12/543 (2%) Strand=Plus/Minus Query 57536 TAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGA 57595 ||||||||| ||||||| || |||| || ||| | | || || ||||| Sbjct 56602 TAGATTTGTTTTGTTTCCAATAAAATACGATCGTATATGGGATTTATATAAGCAGGCACT 56543 Query 57596 AGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTC 57655 ||||||||||||| | ||||||||||| | ||||| ||| | ||||||| || Sbjct 56542 TTCATCGTTTTGGACTGCTGAAGAAGTAGATTTATCTAATGATTTAGACGATTGGAATGG 56483 Query 57656 CCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGA 57715 || || || ||| ||| ||||||| | | |||||||| ||||| || ||||| || Sbjct 56482 TCTTAATGATGATGAAAGACATTTTATAAGTTATGTGTTGGCATTTTTTGCAGCATCAGA 56423 Query 57716 TGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGC 57775 ||| |||||||| || ||| | | |||| ||| || ||||| || | | || || Sbjct 56422 TGGGATTGTTAATGAAAATCTTTTAGAAAATTTTGCAGCGGAAGTTCAGATACCAGAAGC 56363 Query 57776 GAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCT 57835 ||||| |||| ||||| ||| | || ||||| | ||||| || ||||| || | Sbjct 56362 TAGATGTGTTTATGGATTCCAAATAATGATAGAAAATATACATTCTGAGATGTACTCATT 56303 Query 57836 ACTCATCGATACGTACGTGA-AGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCG 57894 || || || || || | | || |||| || | ||| | | || ||||| || Sbjct 56302 GCTAATAGAAACATATATTAGAGAACAA-GAGAAAAAAGATTTTTTATTTAACGCAATTT 56244 Query 57895 AAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAA-----AAAG 57949 ||||| || | || || || ||||| ||| | || |||||||||| ||| Sbjct 56243 CTACAATACCAACAATTAAAAATAAAGCAGACTGGACTATGAAATGGATAACGGATAAAA 56184 Query 57950 CGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTT 58009 || | || || || |||| || || || ||| |||||||| ||||| Sbjct 56183 AATCATG-----TTTTGCTACAAGAATAATTGCATTTGCGTGCGTAGAAGGTATTTTCTT 56129 Query 58010 TTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGAC 58069 || || ||||| | ||||| ||| | || ||||| || | ||||| || || || Sbjct 56128 CTCTGGATCTTTTGCATCCATATTCTGGCTTAAAAAACGTGGATTAATGCCAGGTCTTAC 56069 Query 58070 GTT 58072 || Sbjct 56068 TTT 56066 >seq157 Length=84007 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || || || ||||| || ||||| | || || ||| | || Sbjct 51917 ATGCAGATATTTGTCAAAACGCTTACGGGCAAGACAATCACACTAGAAGTCGAATCCACC 51976 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| | |||| |||||| | |||| ||||||||||| | || || || || Sbjct 51977 GACTCCATAGAAAATGTCAAAGCAAAAATACAAGACAAGGAAGGAATACCTCCAGATCAA 52036 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | ||||| || || ||||| |||||||| || || |||| ||||| || Sbjct 52037 CAAAGATTGATATTTGCAGGTAAACAATTGGAAGATGGTAGAACATTGAGTGATTACAAT 52096 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || |||||||| || |||||| |||| |||||| ||||||| || Sbjct 52097 ATCCAGAAAGAATCTACACTTCATTTGGTTCTTAGATTGAGGGGAGG 52143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764226888800