Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887945.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq24 111 3e-19 >seq24 Length=118493 Score = 111 bits (122), Expect = 3e-19 Identities = 300/448 (67%), Gaps = 27/448 (6%) Strand=Plus/Minus Query 101919 TTGCCTTTGC-TGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 |||| ||||| ||| || ||||| || ||||| ||| | || |||||||| |||||| Sbjct 56159 TTGCATTTGCGTGC-GTAGAAGGTATTTTCTTCTCTGGATCTTTTGCATCCATATTCTGG 56101 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | || || | || | |||| ||||| || | ||||||||| || || ||| || Sbjct 56100 CTTAAAAAACGTGGATTAATGCCAGGTCTTACTTTCTCCAATGAATTAATCAGTAGAGAT 56041 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGT---TTTGTTGATA-- 102092 ||||| | ||| || |||||||| || || ||| | | || | || | Sbjct 56040 GAAGGAGTGCATGTTGAATTTGCATGT---CTCTT---AAATGCTCACTTAGAAGAAAAA 55987 Query 102093 -CCCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAA 102151 | |||| | || | || | || ||||| || | ||||| || ||||||||||||| Sbjct 55986 GCACCAT-ATGAAACAGTAATC--GAAATAGTTAAAGAAGCAGTAGCAATTGAACAAGAA 55930 Query 102152 TTT----CTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAG 102207 ||| || | ||| | || | ||| |||| ||||||||||| || | ||| | Sbjct 55929 TTTGTTTCTGAAAGTCTACCCGTAAGTTTAATT----GGAATGAACTGTAAATCTATGTG 55874 Query 102208 CCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTA 102267 | ||||| ||||||||||| || || || || ||||| | ||| | || || || Sbjct 55873 TAATTACATAGAATTTGTGGCTGACAATCTCTTAGTTGATCTAGGATTCTCTAAACATTA 55814 Query 102268 TAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCT-CGAGAATAAGACCAACT 102326 || | || || || |||||||| ||||| || | | || | || ||||| | Sbjct 55813 CAACACTGAAAATCCATTTGATTTCATGGAAAATATATCTTTACAAGGA-AAAACCAATT 55755 Query 102327 TTTTTGAAAAGAGAGTCGCCGAGTATCA 102354 | |||||||| |||||||| || || || Sbjct 55754 TCTTTGAAAAAAGAGTCGCAGAATACCA 55727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989579055172450