Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887945.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq24 325 5e-84 seq370 266 4e-66 >seq24 Length=118493 Score = 325 bits (360), Expect = 5e-84 Identities = 610/888 (69%), Gaps = 19/888 (2%) Strand=Plus/Plus Query 35870 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCC 35929 |||||||| | || | |||||| || ||||| ||||| |||| ||| |||||||||||| Sbjct 55727 TGGTATTCTGCGACTCTTTTTTCAAAGAAATTGGTTTTTCCTTGTAAAGATATATTTTCC 55786 Query 35930 ATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATCAAT 35989 |||||||| |||||||| | || ||| ||| ||||| | ||| | | Sbjct 55787 ATGAAATCAAATGGATTTTCAGTGTTGTAATGTTTAGAGAATCCTAGATCAACTAAGAGA 55846 Query 35990 CTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 36049 | || || ||||||||||| || | ||| || ||| |||||||| || | | Sbjct 55847 TTGTCAGCCACAAATTCTATGTAATTACACATAGATTTACAGTTCATTCCAATTAAACTT 55906 Query 36050 ACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGAT 36109 || || ||| ||| || ||||||||||||||| | || || ||| | | || Sbjct 55907 ACGGGTAGACTTTCAGAAACAAATTCTTGTTCAATTGCTACTGCTTCTTTAACTATTTCG 55966 Query 36110 ATTACTGTTTCTTCACTCGGTGGATACAATAAATG----TTTAAACATCAAACATGCGAA 36165 ||||||||||| | | | | ||| || ||||| | |||||| || Sbjct 55967 ATTACTGTTTCATATGGTGCTTTTTCTTCTAAGTGAGCATTTAAG----AGACATGCAAA 56022 Query 36166 ATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 36225 || || | || || |||||||| |||||||| ||||| || || || || ||||| Sbjct 56023 TTCAACATGCACTCCTTCATCTCTACTGATTAATTCATTGGAGAAAGTAAGACCTGGCAT 56082 Query 36226 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTC 36285 || ||||| ||||||||||| |||||||| ||||| |||||||| |||||||| ||||| Sbjct 56083 TAATCCACGTTTTTTAAGCCAGAATATGGATGCAAAAGATCCAGAGAAGAAAATACCTTC 56142 Query 36286 TACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT---GTATCCACTT 36342 ||| |||||| ||||| | ||| || ||| | | | || |||||| || Sbjct 56143 TACGCACGCAAATGCAATTATTCTTGTAGCAAAACATGATTTTTTATCCGTTATCCATTT 56202 Query 36343 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 36402 || ||| || || || ||||| | || ||||| || || ||||| | | | Sbjct 56203 CATAGTCCAGTCTGCTTTATTTTTAATTGTTGGTATTGTAGAAATTGCGTTAAATAAAAA 56262 Query 36403 Gt-ttttttCATTACTATCTTTAACATATGTATCAATCA--AAAGACTATACATTTCCGA 36459 | ||||||| | | ||| ||| |||||| || || | || || ||||| || || Sbjct 56263 ATCTTTTTTCTCTTGT-TCTCTAATATATGTTTCTATTAGCAATGA--GTACATCTCAGA 56319 Query 36460 ATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTAC 36519 ||| || ||||| || ||||| ||||| || | ||||||||| || | ||||| || Sbjct 56320 ATGTATATTTTCTATCATTATTTGGAATCCATAAACACATCTAGCTTCTGGTATCTGAAC 56379 Query 36520 TTCTG-TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 36578 ||| | | |||||| |||| | ||||||||| || || || || |||||||||| Sbjct 56380 TTCCGCTGCAAAAT-TTTCTAAAAGATTTTCATTAACAATCCCATCTGATGCTGCAAAAA 56438 Query 36579 ACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGA 36638 | ||||| |||| ||||||||| | |||| | | || ||||||||| | | Sbjct 56439 ATGCCAACACATAACTTATAAAATGTCTTTCATCATCATTAAGACCATTCCAATCGTCTA 56498 Query 36639 TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 36698 ||| ||||||| ||| |||||||| | |||||||| |||| ||||| ||||| | Sbjct 56499 AATCATTAGATAAATCTACTTCTTCAGCAGTCCAAAACGATGAAAGTGCCTGCTTATATA 56558 Query 36699 TATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTT 36746 || ||| || || |||| |||||||| | ||||||||||| || Sbjct 56559 AATCCCATATACGATCGTATTTTATTGGAAACAAAACAAATCTATCTT 56606 >seq370 Length=149473 Score = 266 bits (294), Expect = 4e-66 Identities = 990/1537 (64%), Gaps = 40/1537 (3%) Strand=Plus/Minus Query 65153 TAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGT 65212 |||| || ||| | || | ||| || |||||||| ||||||| || ||| | || Sbjct 55746 TAAATCTTTAATTAAATAAGAATTTACAACTTGAAAATCTCCAGCTAAAGTTCTTCTGGT 55687 Query 65213 GTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGA 65272 |||||||| || | ||||| | | | |||||| ||||||||||| | || || Sbjct 55686 ATAAATATTTGAAGTTAAAGGTTCTATACATTCATTAAAACCCAAAATTTGGGATGTAGA 55627 Query 65273 TGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATC 65332 ||| || |||||| || || ||||| |||||||| || | || ||||||| || Sbjct 55626 TGCTGTAGGCATAACAGCAACAAATAATGAATTTCTAACTCCATGCTTTTTGATTTTTTC 55567 Query 65333 TTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAG 65392 | | | | ||||||| | | ||| | || |||| Sbjct 55566 TCTCAAAATATCCCAATCTAATAAATCTGTTGGGGTGGTTTTATACATATCAAAATGTAA 55507 Query 65393 AATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAG 65452 | ||| | ||| ||||| ||||||| ||||| | || | | || |||| Sbjct 55506 TAGACCCTGACTCAATGGAGATCCCTCATATGTTTCGTAAGTACCATACCGTTCTGCTAA 55447 Query 65453 TTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATC 65512 |||| ||| | || |||||| |||||||| |||||||| || | |||||||| || Sbjct 55446 TTCAGTACTTGATTCCAATGCAGAATAATAAATAGTTTCGAAAATTTGCTTATTTA-ATA 55388 Query 65513 TTGT-GCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTT 65571 | | ||||| ||||||||||| ||| | |||||| | || |||||||||| Sbjct 55387 ATCTAGCTTCTTCACTATCAAATGGCATTCTTAGAATAATAAATACATCGGCTAATCCTT 55328 Query 65572 GAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGAT 65631 ||||||||||||| ||||||||||||||| ||||| ||| || |||| | |||| Sbjct 55327 GAACACCAATACCCATAGGTCTATGTCTCATATTACTTTTTTTAGTTTCTTCTACTGGAT 55268 Query 65632 AATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCA 65691 | | | | ||||| | ||| | |||| | |||| ||||| || | || || | Sbjct 55267 ATTTTGTTCTGTCTATTACCCTATCCAAATTTTTTACAAGAACTTTTACTATCTCTTTTA 55208 Query 65692 GTTTGAGAAAATCAAATCGCTCATCTATTACAAACATGTTCAATG--CAACAGATGCCAG 65749 |||| | ||||||||| | |||| ||| | | ||| | | | | ||||| | Sbjct 55207 GTTTTATGAAATCAAATTTGTTATCT-TTA-ATGAAAGTTGGAAGACCTATTGATGCTAA 55150 Query 65750 ATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACT 65809 ||||||||| |||| |||| || | | || | ||| || | ||||||||| Sbjct 55149 ATTACAAACAGCTATTTCATCAGGCTTAGTTACTTCAACTATTTCTGCACAAAGATTAGA 55090 Query 65810 ACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAG 65869 ||| || || | ||| | ||||| || ||| | | | ||||||| ||| ||||||| Sbjct 55089 ACATTTTATAGATCCAATATTTTTCTGGTTAGAATATCTATTACACGTATCTTTATAAAT 55030 Query 65870 AATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC 65929 ||||| ||| |||| ||||| || || | ||| || |||| |||||| | | |||| Sbjct 55029 TATGAAAGGATTACCTGTTTCTATTTGTGTTTCAATTATCGTTTTCCAAAGATGTTGAGC 54970 Query 65930 CTTTA------TTATAG--ATTTGTATCTCTT-TTCTCTTTCGTATAGTGTATACAATCG 65980 |||| |||| | | | | | ||| | | ||| || ||| | ||||| | Sbjct 54969 TTTTACAGTTCTTATTGCCAATCCTTTTGCTTCATATTCTTCATAAAGT-TTTACAAACT 54911 Query 65981 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 66040 | | || || || ||| || |||| | ||||| | | | | || Sbjct 54910 CTTCATTGTGTTTCTCC---CAT-----AAATCAGGTGCTGTATCCGCAGAAAAAAGTGA 54859 Query 66041 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 66100 ||| ||| | || | |||| |||||| || | ||| || | |||||| ||| ||| Sbjct 54858 CCAATCTTTATTTTCTTCGACTCTTTTCATGAATAAATCTGGTACCCAAAGTCCTAAAAA 54799 Query 66101 TAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 66160 ||||||||| ||||| ||| || ||||| ||||||| | | || | || ||| Sbjct 54798 TAAATCTCTTGTTCTTACTTCGTCTTTTCCAACATTCTTTCTTAATTCTA-AAAATTCAT 54740 Query 66161 A-ATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 66219 | || || |||||| ||||| | ||||| ||||| | ||||| | || ||||||| Sbjct 54739 AGATTTCTACATGCCATGGTTCTATGTATACTGCCATTGCACCAGGTCTCTTTTTTCCTC 54680 Query 66220 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA-CATTGGAATAATACCATTG 66278 | |||| || || | | || | || || | | || ||| || | || || Sbjct 54679 CTTGATTTACATACTTTGTTGT-TGCTTCAAATGTTTTAAGCATAGGTACAACTCCGAGT 54621 Query 66279 GATGTACCATTGGTCCCGGAGA---TATAG--CTTCCACTTGCACGAATATTACTAATTG 66333 ||| | ||| || | ||| ||| | ||| |||| | | |||| ||| Sbjct 54620 GATCTTCCA-----CCTGTAGATTTTATTGTAGATCCTTTTGCTCTCACATTATGAATAT 54566 Query 66334 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 66393 | |||| || ||||| ||||||| || | || || ||| | ||||| | | Sbjct 54565 TAATTCCTAGACCTCCTGCACTTTTAGATATAAGAGCACAGTTTTTCACAGTATCGAATA 54506 Query 66394 TGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 66453 | || |||||| ||| || | || | | |||||||| | || ||| | | Sbjct 54505 TACCTTCTATAGAATCCTCTTTGATATCCAAAAGAAAACATGAACTCAATTGATTATTCT 54446 Query 66454 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 66513 | ||||| | |||||| || ||||| | ||||| |||| |||||| ||| | || || Sbjct 54445 TTGTTCCGGAATTAAACAATGTAGGTGTTGCGTGAATAAAATATTTTTTAGACATTAAAT 54386 Query 66514 TGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTA 66573 | ||||||| | || ||||| || | ||||||| ||| || |||||||| | Sbjct 54385 TATACGTCTGTAACGCATCATCTATTTCTTCATCATGAATTTCTAAGGCTACACGCATAA 54326 Query 66574 ACATGTGCTGAGGTCTTTCA-ACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 66632 | | | ||| ||||||||| || || || || |||| ||||| || ||| ||| | Sbjct 54325 AAACATCCTGTGGTCTTTCATACCAT-AAATTTTTATTTTTTAACAAATACGATCTTTGC 54267 Query 66633 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 66669 |||||||| | |||||||| || | | ||| |||| Sbjct 54266 AAAGTTTTCACCCCAAAATAATTTAAAGTAAAATCTC 54230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658169591407600