Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887945.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq24 105 8e-18 seq367 95.1 1e-14 seq390 89.7 6e-13 >seq24 Length=118493 Score = 105 bits (116), Expect = 8e-18 Identities = 254/382 (66%), Gaps = 12/382 (3%) Strand=Plus/Minus Query 164604 TAAAATTGTTAATGGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGT 164663 |||||||||||||||||| || | ||||| |||||| | || ||| ||| ||| | Sbjct 81798 TAAAATTGTTAATGGTCCGGAGATTTTGAATAAATATATTGGAGAGAGTGAAAAAAATAT 81739 Query 164664 TAGAAAGTTGTTTCAGGAGGCTGAAGAAGAACAAAAGA--AAGCAGGTTTAGCTAGTAAA 164721 ||| | || || || || ||| |||| || || | || | | || | | Sbjct 81738 CAGAGAATTATTCGCAGAAGCAGAAAAAGATCAGAAAACCAAAAAAG---AGAGATCACC 81682 Query 164722 -TTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGTGATAATAT 164780 || ||| | ||| |||||||||| ||||| || | || |||| | || | | Sbjct 81681 GTTGCATATCATTATTTTTGATGAAATAGACGCGATATGTAAAAGTAGAGGAAGCACAAC 81622 Query 164781 TATTCATGATGCAG------TGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATC 164834 || | || || || | || ||||| || ||| | ||||| |||||||||||||| Sbjct 81621 TACTGGTGTTGGAGACCAAGTAGTAAATCAATTACTTACAAAAATGGATGGTGTAGAATC 81562 Query 164835 CTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTT 164894 ||||||||||| | | |||| |||||||| || ||||| || ||| || || Sbjct 81561 ATTAAATAATATACTTGTAATAGGAATGACCAATAGATTGGATTTGATAGATAGCGCATT 81502 Query 164895 ATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACG 164954 |||| ||||||| |||| ||||| | || ||| | ||||| || | |||| | | Sbjct 81501 ATTAAGACCTGGAAGATTTGAATTACACATTGAAGTTCCTTTACCAGATGAGGAAGCAAG 81442 Query 164955 CCTTCAAATTTTAAAAGTTCAT 164976 | ||||||| || ||||| Sbjct 81441 AACTGAAATTTTTAACATTCAT 81420 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 165480 AAAAATATTTTCA--GATGCCCTTAAATTTGATTCTGCGTGTATTGTTTTAGATGATTTA 165537 ||||||||||| | || ||| ||||| || | |||||||| | |||||||| || Sbjct 80906 AAAAATATTTTTATGGACGCCTATAAATCCGAGTTATCGTGTATTATCTTAGATGAAATA 80847 Query 165538 GAACGATGGTTAGATTATGTACCCATCGGACCTAGGTTTTCTAATTCGATATTACAAACT 165597 ||| | |||||||||| |||| |||||||| ||||||||||| |||||||| || Sbjct 80846 GAATCCTTAGTAGATTATGTTGCCATTGGACCTAGATTTTCTAATTCTGTATTACAAGCT 80787 Query 165598 TTA 165600 || Sbjct 80786 ATA 80784 >seq367 Length=8762 Score = 95.1 bits (104), Expect = 1e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 19331 AAAATTAAATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACT 19390 ||||| ||| || |||| | | ||||||| ||||||| ||||| ||||||||| | Sbjct 7688 AAAATAAAAGTACGATCATGCAGAATACCTCAAATAGGAGATAAATTTGCTTCTCGACAT 7747 Query 19391 GCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGAT 19450 | || ||||| || || |||| | | |||||||| ||||| ||||| ||||| Sbjct 7748 GGACAGAAAGGTACCATAGGAATGACATTAAGACAAGAAGAAATGCCATTTACCAAAGAA 7807 Query 19451 GGTATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCA 19492 || | | || ||| | ||||| ||||||||||| |||||| Sbjct 7808 GGATTGATACCAGATGTGATTATGAACCCACATGCATTTCCA 7849 >seq390 Length=4512 Score = 89.7 bits (98), Expect = 6e-13 Identities = 141/201 (70%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 6840 ATAAATATGAGCATCTCCTAGCGTATGAATAAATTCACCTGGTTTCATATCAACAGCTTG 6899 ||| | |||| |||| |||| | ||| |||||||||||||||| | || | ||| Sbjct 290 ATATAAATGAACATCACCTAAAGAATGGATAAATTCACCTGGTTCTAATCCAGTAACTTT 231 Query 6900 AGCAA---TTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCC 6956 || | ||||| | | | || |||| ||| | |||||||||||| || ||||| Sbjct 230 TGCCACCATTAAA---GCAAGAAGTGAATAACTAGCAATATTAAAAGGTACTCCCAATCC 174 Query 6957 CATATCTGCTGATCTTTGATAACATTGACAAGATAAAATATTGTCTATAGCATAAAATTG 7016 |||||| | ||||||||||| | ||||| ||| |||| || |||||||||| Sbjct 173 CATATCACCGGATCTTTGATATAAAAGACAACTTAATTTATTATCAGCGACATAAAATTG 114 Query 7017 ACACAATACATGACATGGAGG 7037 | | || ||||||||| || Sbjct 113 AAATAAACAATGACATGGTGG 93 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595869095124000