Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887945.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq290 158 1e-33 seq157 123 2e-23 >seq290 Length=54858 Score = 158 bits (174), Expect = 1e-33 Identities = 182/243 (75%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 94767 TAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCA 94826 ||| |||||| || ||||| |||| || || || ||||| ||||||||||| || | Sbjct 33830 TAACATTTTAATTACCACCTCTTAATCTTAATACTAAATGCAACGTAGATTCCTTCTGTA 33889 Query 94827 CGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCT 94884 ||||||||||| || |||| | |||||| ||||||||||| |||| || ||||| Sbjct 33890 TATTATAATCGCT--TAATGTTCTACCATCCTCGAGCTGTTTTCCTGCAAATATCAATCT 33947 Query 94885 TTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGT 94944 || ||||||||||| || |||||||| || | || || ||||| || | | ||| Sbjct 33948 CTGTTGATCTGGAGGTATTCCTTCTTTATCCTGTATCTTAGCCTTTACATTTTCTATAGT 34007 Query 94945 GTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTG 95004 |||| | || || |||| || || |||||||| || |||||||| ||||||||||| Sbjct 34008 ATCAGAATTTTCTACTTCAAGAGTAATTGTTTTTCCTGTGAGAGTTTTAACAAAGATCTG 34067 Query 95005 CAT 95007 ||| Sbjct 34068 CAT 34070 >seq157 Length=84007 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 |||||| ||||||| | ||||| || | |||||||| || || | || ||||| || Sbjct 52144 TCCTCCCCTCAATCTAAGAACCAAATGAAGTGTAGATTCTTTCTGGATATTGTAATCACT 52085 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 || || | ||| |||| ||||| || |||| || |||||||| ||||||||||| Sbjct 52084 CAATGTTCTACCATCTTCCAATTGTTTACCTGCAAATATCAATCTTTGTTGATCTGGAGG 52025 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 || ||||| ||||| | |||||||| ||||| | | | ||| | | ||||| Sbjct 52024 TATTCCTTCCTTGTCTTGTATTTTTGCTTTGACATTTTCTATGGAGTCGGTGGATTCGAC 51965 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||| || || || ||||| ||||| ||||| |||||||| Sbjct 51964 TTCTAGTGTGATTGTCTTGCCCGTAAGCGTTTTGACAAATATCTGCAT 51917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448289014580400