Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887945.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq24 289 4e-73 seq370 260 2e-64 >seq24 Length=118493 Score = 289 bits (320), Expect = 4e-73 Identities = 613/900 (68%), Gaps = 25/900 (3%) Strand=Plus/Plus Query 33016 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCC 33075 |||||||| | || | |||||| || ||||| |||||||||| || |||||||||||| Sbjct 55727 TGGTATTCTGCGACTCTTTTTTCAAAGAAATTGGTTTTTCCTTGTAAAGATATATTTTCC 55786 Query 33076 ATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAAT 33135 ||||||||||| ||||| | || ||| ||| ||||| | ||| | | Sbjct 55787 ATGAAATCAAATGGATTTTCAGTGTTGTAATGTTTAGAGAATCCTAGATCAACTAAGAGA 55846 Query 33136 CTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 33195 | || || || |||||||| || | ||| || ||| |||||||| || | | Sbjct 55847 TTGTCAGCCACAAATTCTATGTAATTACACATAGATTTACAGTTCATTCCAATTAAACTT 55906 Query 33196 ACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGAT 33255 || || ||| ||| || ||||||||||||||| | ||| || ||| ||| | || | Sbjct 55907 ACGGGTAGACTTTCAGAAACAAATTCTTGTTCAATTGCTACTGCTTCT-TTA-ACTATTT 55964 Query 33256 CTA--ACGGTTTCTTCACTCGGTGGATGCAATAAATG----TTTAAACATCAAACATGCG 33309 | | || ||||| | | | | ||| || ||||| | |||||| Sbjct 55965 CGATTACTGTTTCATATGGTGCTTTTTCTTCTAAGTGAGCATTTAAG----AGACATGCA 56020 Query 33310 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGC 33369 || || |||| || || |||||||| |||| ||| ||||| || || || || ||| Sbjct 56021 AATTCAACATGCACTCCTTCATCTCTACTGATTAATTCATTGGAGAAAGTAAGACCTGGC 56080 Query 33370 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCT 33429 |||| ||||| ||||||||||| |||||||| || || |||||||| ||||| || ||| Sbjct 56081 ATTAATCCACGTTTTTTAAGCCAGAATATGGATGCAAAAGATCCAGAGAAGAAAATACCT 56140 Query 33430 TCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATG---TATCCA 33485 ||||| ||| ||||| ||||| | ||| || ||| | | | || |||||| Sbjct 56141 TCTAC-GCACGCAAATGCAATTATTCTTGTAGCAAAACATGATTTTTTATCCGTTATCCA 56199 Query 33486 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33545 || || ||| || || || ||||| | || || || || || ||||| | Sbjct 56200 TTTCATAGTCCAGTCTGCTTTATTTTTAATTGTTGGTATTGTAGAAATTGCGTTAAATAA 56259 Query 33546 ATAGt-ttttttCATTACTATCTTTAACATAAGTATCGATCA--AAAGACTATACATTTC 33602 | | | ||||||| | | ||| ||| ||| || || || | || || || ||| || Sbjct 56260 AAAATCTTTTTTCTCTTGT-TCTCTAATATATGTTTCTATTAGCAATGAGTA--CATCTC 56316 Query 33603 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 33662 ||||| || ||||| || || || ||||| || | ||||||||| || | ||||| Sbjct 56317 AGAATGTATATTTTCTATCATTATTTGGAATCCATAAACACATCTAGCTTCTGGTATCTG 56376 Query 33663 TACTTCTG-TACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 33721 ||||| | | |||||| ||| | ||||||||| || || || || ||||||| Sbjct 56377 AACTTCCGCTGCAAAATT-TTCTAAAAGATTTTCATTAACAATCCCATCTGATGCTGCAA 56435 Query 33722 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCAT 33781 |||| ||||| |||| ||||||||| | |||| || | || ||||||||| | Sbjct 56436 AAAATGCCAACACATAACTTATAAAATGTCTTTCATCATCATTAAGACCATTCCAATCGT 56495 Query 33782 TGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 33841 | ||| ||||||| |||||||||||| | |||||||| |||| ||||| |||| Sbjct 56496 CTAAATCATTAGATAAATCTACTTCTTCAGCAGTCCAAAACGATGAAAGTGCCTGCTTAT 56555 Query 33842 ACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTG 33901 | | | ||| || || |||| ||||| || | ||||||||||| | | |||||| Sbjct 56556 ATAAATCCCATATACGATCGTATTTTATTGGAAACAAAACAAATCTATCTTCAGTTGGTG 56615 >seq370 Length=149473 Score = 260 bits (288), Expect = 2e-64 Identities = 985/1532 (64%), Gaps = 30/1532 (2%) Strand=Plus/Minus Query 62309 TAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGT 62368 |||| || ||| | || | ||| || |||||||| ||||||| || ||| | || Sbjct 55746 TAAATCTTTAATTAAATAAGAATTTACAACTTGAAAATCTCCAGCTAAAGTTCTTCTGGT 55687 Query 62369 GTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGA 62428 |||||||| || | ||||| | | |||||| ||||||||||| | || || Sbjct 55686 ATAAATATTTGAAGTTAAAGGTTCTATACATTCATTAAAACCCAAAATTTGGGATGTAGA 55627 Query 62429 TGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATC 62488 ||| || |||||| || || ||||| |||||||| || | || ||||||| || Sbjct 55626 TGCTGTAGGCATAACAGCAACAAATAATGAATTTCTAACTCCATGCTTTTTGATTTTTTC 55567 Query 62489 TTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAG 62548 | | | | ||||||| | | ||| | || |||| Sbjct 55566 TCTCAAAATATCCCAATCTAATAAATCTGTTGGGGTGGTTTTATACATATCAAAATGTAA 55507 Query 62549 AATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAG 62608 | ||| | ||| ||||| ||||||| ||||| | || | | || |||| Sbjct 55506 TAGACCCTGACTCAATGGAGATCCCTCATATGTTTCGTAAGTACCATACCGTTCTGCTAA 55447 Query 62609 TTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATC 62668 |||| ||| | || |||||| |||||||| |||||||| || | |||||||| || Sbjct 55446 TTCAGTACTTGATTCCAATGCAGAATAATAAATAGTTTCGAAAATTTGCTTATTTA-ATA 55388 Query 62669 TTGT-GCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTT 62727 | | ||||| ||||||||||| ||| | |||||| | || |||||||||| Sbjct 55387 ATCTAGCTTCTTCACTATCAAATGGCATTCTTAGAATAATAAATACATCGGCTAATCCTT 55328 Query 62728 GAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGAT 62787 ||||||||||||| ||||||||||||||| ||||| ||| || |||| | |||| Sbjct 55327 GAACACCAATACCCATAGGTCTATGTCTCATATTACTTTTTTTAGTTTCTTCTACTGGAT 55268 Query 62788 AATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCA 62847 | | | | ||||| | ||| | |||| | |||| ||||| || | || || | Sbjct 55267 ATTTTGTTCTGTCTATTACCCTATCCAAATTTTTTACAAGAACTTTTACTATCTCTTTTA 55208 Query 62848 GTTTGAGAAAATCAAATCGCCCATCTATTACAAACATGTTCAAG-GCAACAGATGCCAGA 62906 |||| | ||||||||| |||| ||| | | | ||| | | ||||| | | Sbjct 55207 GTTTTATGAAATCAAATTTGTTATCT-TTAATGAAAGTTGGAAGACCTATTGATGCTAAA 55149 Query 62907 TTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTA 62966 |||||||| |||| |||| || | | || | ||| || | ||||||||| | Sbjct 55148 TTACAAACAGCTATTTCATCAGGCTTAGTTACTTCAACTATTTCTGCACAAAGATTAGAA 55089 Query 62967 CACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 63026 || || |||| ||| | ||||| || ||| | | | ||||||| ||| ||||||| Sbjct 55088 CATTTTATAGATCCAATATTTTTCTGGTTAGAATATCTATTACACGTATCTTTATAAATT 55029 Query 63027 ATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCC 63086 ||||| ||| |||| ||||| || || | ||| || |||| |||||| | | |||| Sbjct 55028 ATGAAAGGATTACCTGTTTCTATTTGTGTTTCAATTATCGTTTTCCAAAGATGTTGAGCT 54969 Query 63087 TTTATTATAGAT-TTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTC 63145 |||| | | ||| |||||| | ||| ||| | ||| | | | | ||||| Sbjct 54968 TTTACAGTTCTTATTGCCAATCCTTT-TGCTTCATATTCTTCATAAAGTTTTACAAACTC 54910 Query 63146 --------GTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197 || || || ||| || |||| | ||||| | | | | ||| Sbjct 54909 TTCATTGTGTTTCTCC---CAT-----AAATCAGGTGCTGTATCCGCAGAAAAAAGTGAC 54858 Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63257 || ||| | || | |||| |||||| || | ||| || | |||||| ||| |||| Sbjct 54857 CAATCTTTATTTTCTTCGACTCTTTTCATGAATAAATCTGGTACCCAAAGTCCTAAAAAT 54798 Query 63258 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63317 | |||||| ||||| ||| || ||||| ||||||| | | || | || |||| Sbjct 54797 AAATCTCTTGTTCTTACTTCGTCTTTTCCAACATTCTTTCTTAATTCTA-AAAATTCATA 54739 Query 63318 -ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63376 || || |||||| ||||| | ||||| ||||| | ||||| | || |||||||| Sbjct 54738 GATTTCTACATGCCATGGTTCTATGTATACTGCCATTGCACCAGGTCTCTTTTTTCCTCC 54679 Query 63377 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA-CATTGGAATAATACCGTTTG 63435 |||| || || | | || | || || | | || ||| || | || ||| || Sbjct 54678 TTGATTTACATACTTTGTTGT-TGCTTCAAATGTTTTAAGCATAGGTACAACTCCGAGTG 54620 Query 63436 ATATACCATTGGTACCGGAGA-TATAGCTTCCACTGGCACGAATATTACTAATTGATAGA 63494 || | ||| ||| | | ||| ||| | || | | |||| ||| | Sbjct 54619 ATCTTCCACCTGTAGATTTTATTGTAG-ATCCTTTTGCTCTCACATTATGAATATTAATT 54561 Query 63495 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCC 63554 |||| || ||||| ||||||| || | || || ||| | || || | ||||| Sbjct 54560 CCTAGACCTCCTGCACTTTTAGATATAAGAGCACAGTTTTTCACAGTATCGAATATACCT 54501 Query 63555 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 63614 ||||| ||| || | || | | |||||||| | || ||| | | | ||| Sbjct 54500 TCTATAGAATCCTCTTTGATATCCAAAAGAAAACATGAACTCAATTGATTATTCTTTGTT 54441 Query 63615 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 63674 || | |||||| || ||||| | ||||| |||| |||||| ||| | || ||| ||| Sbjct 54440 CCGGAATTAAACAATGTAGGTGTTGCGTGAATAAAATATTTTTTAGACATTAAATTATAC 54381 Query 63675 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63734 |||| | || ||||| || | ||||||| ||| || |||||||| || | Sbjct 54380 GTCTGTAACGCATCATCTATTTCTTCATCATGAATTTCTAAGGCTACACGCATAAAAACA 54321 Query 63735 TGCTGAGGTCTTTCA-ACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63793 | ||| ||||||||| || || || || |||| ||||| || ||| ||| |||||| Sbjct 54320 TCCTGTGGTCTTTCATACCAT-AAATTTTTATTTTTTAACAAATACGATCTTTGCAAAGT 54262 Query 63794 TTTAAAACCAAAATAGTTGTATGAAAAGTCTC 63825 ||| | |||||||| || | | ||| |||| Sbjct 54261 TTTCACCCCAAAATAATTTAAAGTAAAATCTC 54230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622944163132400