Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887945.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq157 134 1e-26 seq290 116 3e-21 >seq157 Length=84007 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| ||||| | || || || | || || | |||||||| ||| Sbjct 51916 AATGCAGATATTTGTCAAAACGCTTACGGGCAAGACAATCACACTAGAAGTCGAATCCAC 51975 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||| |||| || | |||||| ||| || ||||| ||||| |||||||| ||||| Sbjct 51976 CGACTCCATAGAAAATGTCAAAGCAAAAATACAAGACAAGGAAGGAATACCTCCAGATCA 52035 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| ||| |||| | | || || ||| | ||||||| |||| | || ||||| || Sbjct 52036 ACAAAGATTGATATTTGCAGGTAAACAATTGGAAGATGGTAGAACATTGAGTGATTACAA 52095 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || || |||||||||||| ||||||| || | |||||||| |||||| Sbjct 52096 TATCCAGAAAGAATCTACACTTCATTTGGTTCTTAGATTGAGGGGAGGA 52144 >seq290 Length=54858 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | || |||||| | ||||| | ||||| || Sbjct 34070 ATGCAGATCTTTGTTAAAACTCTCACAGGAAAAACAATTACTCTTGAAGTAGAAAATTCT 34011 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || || ||||| || |||||||| |||||||| |||||| Sbjct 34010 GATACTATAGAAAATGTAAAGGCTAAGATACAGGATAAAGAAGGAATACCTCCAGATCAA 33951 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| |||| | | || || || ||||| |||| |||| | ||||||||||| Sbjct 33950 CAGAGATTGATATTTGCAGGAAAACAGCTCGAGGATGGTAGAACATTAAGCGATTATAAT 33891 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || |||||||| | |||||||| |||||||| ||||| || Sbjct 33890 ATACAGAAGGAATCTACGTTGCATTTAGTATTAAGATTAAGAGGTGG 33844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429933956460450