Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887945.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq157 122 8e-23 >seq157 Length=84007 Score = 122 bits (134), Expect = 8e-23 Identities = 170/236 (72%), Gaps = 8/236 (3%) Strand=Plus/Plus Query 24997 CAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGT 25056 ||||||| |||||||| || || | || || || | |||||| | ||||| || || Sbjct 51915 CAATGCAGATATTTGTCAAAACGCTTACGGGCAAGACAATCACACTAGAAGTCGAATCCA 51974 Query 25057 CTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 | ||| | || || |||| ||||||||| || ||||| ||||| || || || Sbjct 51975 CCGACTCCATAGAAAATGTCA---AAGCAAAAATACAA-GACAAGGAAGGAATACCTCCA 52030 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 || ||||| | | || ||||| || |||||||| ||||||| | | || || | ||| Sbjct 52031 GATCAACAAAGATTGATATTTGCAGGTAAACAATTGGAAGATGGTAGAACATTGAGTGAT 52090 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAA 25228 |||||||| || |||||||| || || ||||| || || || | || |||||||| Sbjct 52091 TACAATATCCAGAAAGAATCTACACTTCATTTGGTTCTTAGATTGAGGGGAGGAAA 52146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433325940337850