Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887945.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq24 352 3e-92 >seq24 Length=118493 Score = 352 bits (390), Expect = 3e-92 Identities = 610/883 (69%), Gaps = 24/883 (3%) Strand=Plus/Plus Query 92806 TGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAATTC 92865 |||||||| | ||| |||||||||||||||| || ||||||| |||||||| | || Sbjct 55727 TGGTATTCTGCGACTCTTTTTTCAAAGAAATTGGTTTTTCCTTGTAAAGATAT--ATTTT 55784 Query 92866 ACTAGTGAT----TGGATTCTTGGCGTTATAATACTTT-----TCACCGATCAACTCGTA 92916 | | || |||||| | | ||| |||| || || |||||||| Sbjct 55785 CCATGAAATCAAATGGATTTTCAGTGTTGTAATGTTTAGAGAATCCTAGATCAACT---- 55840 Query 92917 CAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG 92976 || | | ||||| |||||||||||||| | | |||| | | ||| |||||||| | Sbjct 55841 -AAGAGATTGTCAGCCACAAATTCTATGTAATTACACATAGATTTACAGTTCATTCCAAT 55899 Query 92977 AAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAA 93036 | || ||| |||||| || | | || |||| || ||| | || |||||||| | Sbjct 55900 TAAACTTACGGGTAGACTTTCAGAAACAAATTCTTGTTCAATTGCTACTGCTTCTTTAAC 55959 Query 93037 GATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATT-AAG---C 93092 ||||| |||||| | || ||||| ||||| | | ||| || |||| ||| | Sbjct 55960 TATTTCGATTACTGTTTCATATGGTGCTTTTTCTTC----TAAGTGAGCATTTAAGAGAC 56015 Query 93093 ACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAAC 93152 | ||||| || ||| | ||||| |||| || || |||||| ||| || | || Sbjct 56016 ATGCAAATTCAACATGCACTCCTTCATCTCTACTGATTAATTCATTGGAGAAAGTAAGAC 56075 Query 93153 CTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTA 93212 |||| | | ||| ||||| || ||||| ||||| || |||||| ||||| || || | Sbjct 56076 CTGGCATTAATCCACGTTTTTTAAGCCAGAATATGGATGCAAAAGATCCAGAGAAGAAAA 56135 Query 93213 TACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGA 93272 ||||||| ||| |||||||| | || | | |||||| || ||| | | Sbjct 56136 TACCTTCTACGCACGCAAATGCAATTATTCTTGTAGCAAAACATGATTTTTTATCCGTTA 56195 Query 93273 TCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAA 93332 ||||||| | || ||| || ||||| || ||||| |||| ||| || ||||||| Sbjct 56196 TCCATTTCATAGTCCAGTCTGCTTTATTTTTAATTGTTGGTATTGTAGAAATTGCGTTAA 56255 Query 93333 ATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTT 93392 ||| ||||| | || |||| || ||||| || |||| || || ||||| | Sbjct 56256 ATAAAAAATCTTTTTTCTCTTGTTCTCTAATATATGTTTCTATTAGCAATGAGTACATCT 56315 Query 93393 CAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCT 93452 ||||||| | ||| || || ||||||||||| || | |||||||||||| | |||| Sbjct 56316 CAGAATGTATATTTTCTATCATTATTTGGAATCCATAAACACATCTAGCTTCTGGTATCT 56375 Query 93453 GCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaa 93512 | ||||| | ||| | |||| ||||||||||| || || ||||| |||||||||| Sbjct 56376 GAACTTCCGCTGCAAAATTTTCTAAAAGATTTTCATTAACAATCCCATCTGATGCTGCAA 56435 Query 93513 aaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGG 93572 |||| ||||| | || ||||||||||| | |||||||| ||||| || ||||||| Sbjct 56436 AAAATGCCAACACATAACTTATAAAATGTCTTTCATCATCATTAAGACCATTCCAATCGT 56495 Query 93573 ATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGT 93632 || ||| || || | ||| |||||||| ||||||||||||||| ||| | || | Sbjct 56496 CTAAATCATTAGATAAATCTACTTCTTCAGCAGTCCAAAACGATGAAAGTGCCTGCTTAT 56555 Query 93633 ACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAA 93675 | | ||||||||| | |||| |||||||| | ||||| Sbjct 56556 ATAAATCCCATATACGATCGTATTTTATTGGAAACAAAACAAA 56598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556858085303600