Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887945.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq390 96.9 3e-15 seq5 96.9 3e-15 >seq390 Length=4512 Score = 96.9 bits (106), Expect = 3e-15 Identities = 171/244 (70%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 20202 CATCTCCCAACGTGTGAATAAACTCCCCGGGT-CTAAGACCAGTAACATGAGCAAGCATA 20260 |||| || || | || ||||| || || ||| |||| |||||||| | || | ||| Sbjct 279 CATCACCTAAAGAATGGATAAATTCACCTGGTTCTAAT-CCAGTAACTTTTGCCACCATT 221 Query 20261 TAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGAC 20320 ||| | || ||||| || ||||| |||||||| |||||||| ||||| || || || Sbjct 220 AAAGCAAGAAGTGAATAACTAGCAATATTAAAAGGTACTCCCAATCCCATATCACCGGAT 161 Query 20321 CTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGA 20380 || ||||| | |||| | | | ||||| |||||||||||| |||| | ||| Sbjct 160 CTTTGATATAAAAGACAACTTAATTTATTATCAGCGACATAAAATTGAAATAAACAATGA 101 Query 20381 CAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGC-ACACATAATGATTCT 20439 || || ||||| ||||| | || | | || ||||| || ||| |||| ||||| Sbjct 100 CATGGTGGAAGAGCCATTTCCCGTAATTGTTCGGGATTCCATGCGACA-ATAACCATTCT 42 Query 20440 TCTA 20443 |||| Sbjct 41 TCTA 38 >seq5 Length=4344 Score = 96.9 bits (106), Expect = 3e-15 Identities = 171/244 (70%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 20202 CATCTCCCAACGTGTGAATAAACTCCCCGGGT-CTAAGACCAGTAACATGAGCAAGCATA 20260 ||||||| || | || ||||| || || ||| |||| |||||||| | || | ||| Sbjct 279 CATCTCCTAAAGAATGGATAAATTCACCTGGTTCTAAT-CCAGTAACCTTTGCCACCATT 221 Query 20261 TAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGAC 20320 ||| | |||||||| || ||||| |||||||| |||||||| ||||| || || || Sbjct 220 AAAGCAAGAAGGGAATAACTAGCAATATTAAAAGGTACTCCCAATCCCATATCACCAGAT 161 Query 20321 CTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGA 20380 || ||||| | |||| | | || || |||||||||||| |||| | ||| Sbjct 160 CTTTGATATAAAAGACAACTTAATTTGTTATCTGCGACATAAAATTGAAATAAACAATGA 101 Query 20381 CAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGC-ACACATAATGATTCT 20439 || || ||||| ||||| | || | | || ||||| || ||| |||| ||||| Sbjct 100 CATGGTGGAAGAGCCATTTCCCGTAATTGTTCGGGATTCCATGCGACA-ATAACCATTCT 42 Query 20440 TCTA 20443 |||| Sbjct 41 TCTA 38 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441370648307600