Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887945.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq157 145 7e-30 seq290 136 4e-27 >seq157 Length=84007 Score = 145 bits (160), Expect = 7e-30 Identities = 199/276 (72%), Gaps = 4/276 (1%) Strand=Plus/Minus Query 45102 TTTTATTTTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATA 45161 |||| || | ||||||| | | || | || | ||| || || ||||| || |||||| Sbjct 52154 TTTTCTTCT-TTCCTCCCCTCAATCTAAGAACCAAATGAAGTGTAGATTCTTTCTGGATA 52096 Query 45162 TTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGC 45221 || ||||| || | ||| || ||| ||||||||||| ||||| ||||||||| ||| Sbjct 52095 TTGTAATCACTCAATGTTCTACCATCTTCCAATTGTTTACCTGCAAATATCAATCTTTGT 52036 Query 45222 TGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCG 45281 || || || || || ||||| || ||||| |||||| ||||| ||||| || |||| Sbjct 52035 TGATCTGGAGGTATTCCTTCCTTGTCTTGTATTTTTGCTTTGACATTTTCTATGGAGTCG 51976 Query 45282 GAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | || |||||||| || || | || ||||| || || ||||| ||||| || ||||| Sbjct 51975 GTGGATTCGACTTCTAGTGTGATTGTCTTGCCCGTAAGCGTTTTGACAAATATCTGCATT 51916 Query 45342 GCGCGACCAATT---TAATAATTTAACTCTTATTTT 45374 | | | |||| ||| || ||| | ||||||| Sbjct 51915 GGGGTAAAAATTTTGTAAAAAAATAAATATTATTTT 51880 >seq290 Length=54858 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || || |||| ||||| ||| |||||||| || |||||||||||||| | ||| || | Sbjct 33856 CTTAATACTAAATGCAACGTAGATTCCTTCTGTATATTATAATCGCTTAATGTTCTACCA 33915 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || | ||||||||||| ||||||||| || || || || || || ||||||||| Sbjct 33916 TCCTCGAGCTGTTTTCCTGCAAATATCAATCTCTGTTGATCTGGAGGTATTCCTTCTTTA 33975 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 || || || || || | ||||| || || ||| || ||||| ||||||| Sbjct 33976 TCCTGTATCTTAGCCTTTACATTTTCTATAGTATCAGAATTTTCTACTTCAAGAGTAATT 34035 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || |||||||| ||||| || ||||| Sbjct 34036 GTTTTTCCTGTGAGAGTTTTAACAAAGATCTGCAT 34070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452000996484400