Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887945.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq5 122 1e-22 seq390 113 6e-20 >seq5 Length=4344 Score = 122 bits (134), Expect = 1e-22 Identities = 206/294 (70%), Gaps = 7/294 (2%) Strand=Plus/Plus Query 105163 ACAATTATCAGATATGGCTCTTCCACCGTGTCATTGTTTGGTACAATTTTACATTAGAAA 105222 ||||||| || |||||||||||||| ||||||||||| | |||||||| | | | Sbjct 71 ACAATTACGGGAAATGGCTCTTCCACCATGTCATTGTTTATTTCAATTTTATGTCGCAGA 130 Query 105223 TAAAATTTATTTAGATTGTCAATTGTATCAAAGATCTGCAGATTTAGGATTAGGTGTACC 105282 ||| | | ||| ||||| || ||||||||||||| ||| | ||||| || ||||| Sbjct 131 TAACA---AATTAAGTTGTCTTTTATATCAAAGATCTGGTGATATGGGATTGGGAGTACC 187 Query 105283 ATATAATATTGGTTTCTATT-CATTTTTGGTGT-GTGTTCTCTCAAAATGGTGTAATCTA 105340 | |||||||| | |||| | || ||| | | || | | | | || | | | Sbjct 188 TTTTAATATTGCTAGTTATTCCCTTCTTGCTTTAATGGTGGCAAAGGTTACTGGATTAGA 247 Query 105341 ACCCCCGGAAAATTTATTCATACTTTTGGAGATGTTCATGTATATTCTAACCATGTTGAC 105400 | || || ||||||| ||| |||| |||||||||||| ||||| || || | || Sbjct 248 A--CCAGGTGAATTTATCCATTCTTTAGGAGATGTTCATTTATATGAGAATCACATCGAA 305 Query 105401 CAATTAAAAATTCAATTAAACAGAAAACCTTACACCTTCCCAAAGGTGAAATTT 105454 | | |||||| |||||| | |||| |||||| | ||||| || | |||||| Sbjct 306 CCAATAAAAAAGCAATTAGAAAGAACACCTTATCCATTCCCTAAAATTAAATTT 359 >seq390 Length=4512 Score = 113 bits (124), Expect = 6e-20 Identities = 204/294 (69%), Gaps = 7/294 (2%) Strand=Plus/Plus Query 105163 ACAATTATCAGATATGGCTCTTCCACCGTGTCATTGTTTGGTACAATTTTACATTAGAAA 105222 ||||||| || |||||||||||||| ||||||||||| | |||||||| | | Sbjct 71 ACAATTACGGGAAATGGCTCTTCCACCATGTCATTGTTTATTTCAATTTTATGTCGCTGA 130 Query 105223 TAAAATTTATTTAGATTGTCAATTGTATCAAAGATCTGCAGATTTAGGATTAGGTGTACC 105282 ||| | | ||| ||||| || ||||||||||| | ||| | ||||| || ||||| Sbjct 131 TAA---TAAATTAAGTTGTCTTTTATATCAAAGATCCGGTGATATGGGATTGGGAGTACC 187 Query 105283 ATATAATATTGGTTTCTATTCA-TTTTTGGTGT-GTGTTCTCTCAAAATGGTGTAATCTA 105340 | |||||||| | |||||| || ||| | | || | | || | || | | | Sbjct 188 TTTTAATATTGCTAGTTATTCACTTCTTGCTTTAATGGTGGCAAAAGTTACTGGATTAGA 247 Query 105341 ACCCCCGGAAAATTTATTCATACTTTTGGAGATGTTCATGTATATTCTAACCATGTTGAC 105400 | || || ||||||| ||| |||| || ||||||||| ||||| || || |||| Sbjct 248 A--CCAGGTGAATTTATCCATTCTTTAGGTGATGTTCATTTATATGAGAATCACATTGAG 305 Query 105401 CAATTAAAAATTCAATTAAACAGAAAACCTTACACCTTCCCAAAGGTGAAATTT 105454 | | |||||| ||| | | |||| |||||| | ||||| || | |||||| Sbjct 306 CCAATAAAAAAGCAACTTGAAAGAACACCTTATCCATTCCCTAAAATTAAATTT 359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658399990284400