Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887945.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq24 370 1e-97 >seq24 Length=118493 Score = 370 bits (410), Expect = 1e-97 Identities = 625/894 (70%), Gaps = 32/894 (4%) Strand=Plus/Plus Query 36888 TGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTCC 36947 || |||||| | |||| | |||| || ||||| || ||||||| || |||||||||||| Sbjct 55727 TGGTATTCTGCGACTCTTTTTTCAAAGAAATTGGTTTTTCCTTGTAAAGATATATTTTCC 55786 Query 36948 ATAAAATCAAATGGATTA-----GATGTATTATATATAGTACTACATGATAATTCCTTCA 37002 || |||||||||||||| | |||| | | || || | | | ||| | | | Sbjct 55787 ATGAAATCAAATGGATTTTCAGTGTTGTAATGTTTAGAGAA-TCCTAGATCAAC---TAA 55842 Query 37003 GAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTA 37062 || | | || || |||||||||||||| |||||||| || | |||| || ||||||| Sbjct 55843 GA-GATTGTCAGCCACAAATTCTATGTAATTACACATAGATTTACAGTTCATTCCAATTA 55901 Query 37063 GTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTA 37122 |||| || | || || |||| || ||| ||| ||| || |||||||||| Sbjct 55902 AACTTACGGGTAGACTTTCAGAAACAAATTCTTGTTCAATTGCTACTGCTTCTTTAACTA 55961 Query 37123 TATTAACAATAACTTCTTCAGTTGGGGGATATTTT---AAAT----ATTTAAACAATAAA 37175 | | | || ||| |||| ||| | | || | || | |||||| | | Sbjct 55962 TTT---CGATTACTGTTTCATATGGTGCTTTTTCTTCTAAGTGAGCATTTAAG----AGA 56014 Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 |||||||| ||| ||| | |||||||||||||| || |||||||| || || || | Sbjct 56015 CATGCAAATTCAACATGCACTCCTTCATCTCTACTGATTAATTCATTGGAGAAAGTAAGA 56074 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAA 37295 ||||||||||| || | |||||||| ||| ||||| | ||||||||||||||| |||||| Sbjct 56075 CCTGGCATTAATCCACGTTTTTTAAGCCAGAATATGGATGCAAAAGATCCAGAGAAGAAA 56134 Query 37296 ATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAA 37355 |||||||| || |||||||| | | | |||| | ||| ||| | | ||| | Sbjct 56135 ATACCTTCTACGCACGCAAATGCAATTATTCTTGTAGCAAAACATGATTTTTTATCCGTT 56194 Query 37356 ATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTT 37415 |||||||| | ||||| ||||| || ||||| | ||||| |||||| || Sbjct 56195 ATCCATTTCATAGTCCAGTCTGCTTTATTTTTAATTGTTGGTATTGTAGAAATTGCGTTA 56254 Query 37416 AAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATT 37475 || | ||| | ||||| || ||| | ||||| || || ||||| || ||||| Sbjct 56255 AATAAAAAATCTTTTTTCTCTTGTTCTCTAATATATGTTTCTATTAGCAATGAGTACATC 56314 Query 37476 TCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAAT 37535 ||||| || |||||||| || ||| || || ||||||| ||| |||||||| | || Sbjct 56315 TCAGAATGTATATTTTCTATCATTATTTGGAATCCATAAACACATCTAGCTTCTGGTATC 56374 Query 37536 TGAACAT-CGTTAAAAAACCTCTTAGCTAAG-TTTTCATTAACTATCCCATCACTAGCTG 37593 ||||| | || | |||| | || ||| ||||||||||| |||||||| |||| Sbjct 56375 TGAACTTCCGCTGCAAAA--TTTTCTAAAAGATTTTCATTAACAATCCCATCTGATGCTG 56432 Query 37594 CAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAT--TTGATAATTTTTTCCA 37651 |||| || || | ||||| ||||||||||||||||||||| || | | ||||| Sbjct 56433 CAAAAAATGCCAACACATAACTTATAAAATGTCTTTCATCATCATTAAGA--CCATTCCA 56490 Query 37652 ATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCACG 37711 ||| | | ||| || |||||||| ||||| ||| | |||||||| || | ||| | Sbjct 56491 ATCGTCTAAATCATTAGATAAATCTACTTCTTCAGCAGTCCAAAACGATGAAAGTGCCTG 56550 Query 37712 TTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAATCTATC 37765 ||||| | ||| ||| || | || ||||||||| | ||||||||||| Sbjct 56551 CTTATATAAATCCCATATACGATCGTATTTTATTGGAAACAAAACAAATCTATC 56604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592313912455600