Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887945.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq157 91.5 1e-13 seq290 89.7 4e-13 >seq157 Length=84007 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| |||||||| ||||| | ||||| || || || || ||| ||| | | Sbjct 51916 AATGCAGATATTTGTCAAAACGCTTACGGGCAAGACAATCACACTAGAAGTCGAATCCAC 51975 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || | | | || |||| |||||| ||||| || ||| | || |||||| Sbjct 51976 CGACTCCATAGAAAATGTCAAAGCAAAAATACAAGACAAGGAAGGAATACCTCCAGATCA 52035 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| ||| | || ||||| || ||||||||||||||| || ||| || ||||| || Sbjct 52036 ACAAAGATTGATATTTGCAGGTAAACAATTGGAAGATGGTAGAACATTGAGTGATTACAA 52095 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 || || ||||||||||| || || |||| | ||||| | ||||| Sbjct 52096 TATCCAGAAAGAATCTACACTTCATTTGGTTCTTAGATTGAGGGGAGG 52143 >seq290 Length=54858 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| ||||| | || || ||||| ||||| ||| ||| ||| Sbjct 34070 ATGCAGATCTTTGTTAAAACTCTCACAGGAAAAACAATTACTCTTGAAGTAGAAAATTCT 34011 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| || || || ||||| ||| | || ||||||| Sbjct 34010 GATACTATAGAAAATGTAAAGGCTAAGATACAGGATAAAGAAGGAATACCTCCAGATCAA 33951 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||| | || ||||| || ||||| | || ||| || ||| | ||||||||| Sbjct 33950 CAGAGATTGATATTTGCAGGAAAACAGCTCGAGGATGGTAGAACATTAAGCGATTATAAT 33891 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 || || || |||||||| |||| | |||||||||||| |||| || Sbjct 33890 ATACAGAAGGAATCTACGTTGCATTTAGTATTAAGATTAAGAGGTGG 33844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425402777997810