Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887945.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq370 237 8e-58 >seq370 Length=149473 Score = 237 bits (262), Expect = 8e-58 Identities = 1116/1739 (64%), Gaps = 90/1739 (5%) Strand=Plus/Minus Query 24651 TTTCTTTTTCTAATGTAAATTGCTTAGCTGATACTGCTGGTTTAGTTCTAAGATAATACA 24710 ||| ||| |||| |||||||| |||| | | |||| || || |||||||| |||| Sbjct 56077 TTTGTTTGTCTACTGTAAATTTAATAGCCTGCATTACTGGCTTGGTCCTAAGATAGTACA 56018 Query 24711 TTCCAGTTTTCAATTTCTTCTTCCAACCGTAAAAATGCATTGATGTTAGTTTTGCA-ATG 24769 ||||||| || |||| || || || ||||||||||| || || | || | ||| Sbjct 56017 TTCCAGTCTTTAATTGTTTTTTGTGTCCATAAAAATGCATACTAGTAAGCTGTGAATATG 55958 Query 24770 TTTGCTGATTCTAAAAACAAGTTCATCGATTGAGCTTGGCAAACAAAACGTTGTCTATCT 24829 | | || ||| ||| | || | ||||| | ||| |||| | || |||||| Sbjct 55957 TGGG-TGTAGCTATAAAAATATTAAGAGATTGTGATTGATCAACATATGGTGTTCTATCA 55899 Query 24830 GCAGCTAAGTCAATGATCGTTTTCATCGATATATCGTAAGCTGTTTTGTATCTCTCTTTT 24889 |||||||| || | || | |||||| || || | |||||| | || | ||| Sbjct 55898 GCAGCTAAATCTAAAATAGATTTCATTTTTAATTCCCATGCTGTTCTATACAAATATTTA 55839 Query 24890 ATCTCAGTTGGAATACTTGCAATATTTTGAACTGATCCATTTTCTCTCAA----TAGATT 24945 || || |||| ||| | | |||| ||| | || |||| | ||| || ||| || Sbjct 55838 ATTTCTTTTGGTATAGCTTCTATATCTTGGATAGAACCATCGT-TCTGAACTACTAGGTT 55780 Query 24946 CAATCTCATATTCGGTGT-CCAAAGATTAATTTTTTCAAGATCTCTAATCAAGTGTTTAT 25004 | | || ||| | | ||| ||||||| |||| | |||| |||| || | || Sbjct 55779 ---TTTTAT-TTCTTTATTCCAGAGATTAAGTTTTAGTAAATCTTTAATTAAATAAGAAT 55724 Query 25005 TTATGATAATAAATTCTCCAGACAAAACTCTTCT--TATTGATAAGTTTGAAGTGAATGG 25062 ||| | ||| ||||||| ||| |||||| ||| ||| |||||||| || || Sbjct 55723 TTACAACTTGAAAATCTCCAGCTAAAGTTCTTCTGGTATAAATA--TTTGAAGTTAAAGG 55666 Query 25063 TTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTAT 25122 ||| | |||||||||| || || ||||| || ||||||||||| ||||| | || | Sbjct 55665 TTCTATACATTCATTAAAACCCAAAATTTGGGATGTAGATGCTGTAGGCATAACAGCAAC 55606 Query 25123 TAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCCCAATCTAA 25182 |||| |||||||| | |||| || || | || | | || ||||||||||||| Sbjct 55605 AAATAATGAATTTCTAACTCCATGCTTTTTGATTTTTTCTCTCAAAATATCCCAATCTAA 55546 Query 25183 ATTATTATCTAACTCGATATCGTTATCATATAAATCAAATTGTAACAATCCACTTGCTGC 25242 || |||| | | | ||| | ||| | |||||| ||||| | || || || Sbjct 55545 --TAA-ATCTG--TTGGGGTGGTTTT-ATACATATCAAAATGTAATAGACC-CTGACTCA 55493 Query 25243 A-GGCGATTGATCAAAAGTTGAATATTTACC------TTTTGTTATTGCCATATCTTTTG 25295 | || ||| ||| | ||| || |||| || || || | | || ||| Sbjct 55492 ATGGAGATCCCTCATATGTTTCGTAAGTACCATACCGTTCTGCTAATTCAGTAC---TTG 55436 Query 25296 ATTGCTCTAACGCAGCATAATACATATTTTCAAAAATCGCTTTGTTTAAAAACTTAGCTT 25355 ||| | || |||| |||||| ||| |||| ||||| || ||||| || |||||| Sbjct 55435 ATTCC---AATGCAGAATAATAAATAGTTTCGAAAATTTGCTTATTTAATAATCTAGCTT 55379 Query 25356 TTTCTCCATCGAAAGCAATT--TCCATTAAGGCGAACGTATCTGCTAATCCCTGAACTCC 25413 ||| | ||| || | ||| | | ||| || ||| |||||||| ||||| || Sbjct 55378 CTTCACTATCAAATGGCATTCTTAGAATAATAAATAC--ATCGGCTAATCCTTGAACACC 55321 Query 25414 TAATCCAACTGGACGATGTTTATTATTACTTATCTCAGTTTCTGATGTTGGATAGAAATT 25473 | || | || | |||| | |||||||| | | ||||||| | |||||| | Sbjct 55320 AATACCCATAGGTCTATGTCTCATATTACTTTTTTTAGTTTCTTCTACTGGATATTTTGT 55261 Query 25474 TGTATCGATCACATTATCTAGATTCTTTATGGCAAG--CTTTGTGTATTT-TCTCAACTC 25530 | | || || || |||| | ||| |||| |||| |||| ||| | | | | | Sbjct 55260 TCTGTCTATTACCCTATCCAAATTTTTTA---CAAGAACTTTTACTATCTCTTTTAGTTT 55204 Query 25531 AATAAAGTCAAAATAAGGCTTATCGTTTATATCTCTTTTTACAAATTTAGATAAAGCGAT 25590 || || ||||| | ||||| || || ||| || || | | | || Sbjct 55203 TATGAAATCAAATTTG---TTATCTTTAATG-----------AAAGTTGGA-AGACCTAT 55159 Query 25591 TGATGCTAAATTACAAACAGCTTGTTCTTTCCCGTCAGAATATTCATTGATCTCGATACA 25650 |||||||||||||||||||||| ||| | | || |||| || || ||| Sbjct 55158 TGATGCTAAATTACAAACAGCTATTTCATCAGGCTTAGTTACTTCAACTATTTCTGCACA 55099 Query 25651 TAAGTTGCTAGATTTGATTACTCCATAATTCTTTTGATTATTGCATGTATTGACAA-TAT 25709 | || | |||| || |||| ||| || || ||| || |||| ||| ||| Sbjct 55098 AAGATTAGAACATTTTATAGATCCAATATTTTTCTGGTTAGAATATCTATT-ACACGTAT 55040 Query 25710 CTTTATATCCTAAATATGGCGTTCCTGTTTCAATTTGAGATACTAAAATTTTCTCCCAAA 25769 ||||||| || | || | |||||||| ||||| | | | | || | | ||||| Sbjct 55039 CTTTATAAATTATGAAAGGATTACCTGTTTCTATTTGTGTTTCAATTATCGTTTTCCAAA 54980 Query 25770 GTTCTCTCGCTTTTACT-TTCTT--TACGAAGTTACCATCAGAAACAGCTCTTTCGTAAA 25826 | | | |||||||| ||||| | | || || | | || | ||| |||| Sbjct 54979 GATGTTGAGCTTTTACAGTTCTTATTGCCAAT---CCTTTTGCTTCATATTCTTCATAAA 54923 Query 25827 GTTCAACAAATTCTTGATTTATTTTCTCAGAGAAAAGTTTGCCATATTTATTGAGAATAA 25886 ||| ||||| |||| ||| |||||| ||||| | | || | Sbjct 54922 GTTTTACAAACTCTTCATTGTGTTTCTC-------------CCATA---AATCAGG-TGC 54880 Query 25887 TATTTGGACAGAATAAA-TG-CCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATC 25944 | | | ||||| ||| || |||||| ||||| || ||| | | ||| |||||||| Sbjct 54879 TGTATCCGCAGAAAAAAGTGACCAATCTTTATTTTCTTCGACTCTTTTCATGAATAAATC 54820 Query 25945 TGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTT 26004 ||| | ||| | | | ||||||||||||| | ||| | ||| |||||||| |||||| Sbjct 54819 TGGTACCCAAAGTCCTAAAAATAAATCTCTTGTTCTTACTTCGTCTTTTCCAACATTCTT 54760 Query 26005 TTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACT 26064 | ||| ||||| || ||| | || ||| ||||||||||||| || | || | Sbjct 54759 TCTTAATTCTAAAAATTCATAGATTTCTACATGCCATGGTTCTATGTATACTGCCATTGC 54700 Query 26065 ACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAA 26124 ||| ||| ||| ||| ||||||| ||| || ||| ||| | || ||| ||| || Sbjct 54699 ACCAGGTCTCTTTTTTCCTCCTTGATTTACATACTTTGTTGTTGC-TTCAAATGTTTTAA 54641 Query 26125 -CATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 ||| || || | ||| ||| ||| ||| | || | |||||| | | || Sbjct 54640 GCATAGGTACAACTCCGAGTGATCTTCCACCTGTAGATTTTATTGTAGATCCTTTTGCTC 54581 Query 26184 TAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTG 26243 | | || ||| || ||| || | || || || | ||| || ||| ||||| | | Sbjct 54580 TCACATTATGAATATTAATTCCTAGACCTCCTGCACTTTTAGATATAAGAGCACAGTTTT 54521 Query 26244 AAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAG 26303 || |||||||| || |||| ||| ||| |||| || | || | |||||| ||| Sbjct 54520 TCACAGTATCGAATATACCTTCTATAGAATCCTCTTTGATATCCAAAAGAAAACATGAAC 54461 Query 26304 ATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATAT 26362 ||||| || ||||||| |||||||| ||||| ||||| || ||| || ||||| Sbjct 54460 TCAATTGATTATTCTTTGTTCCGGAATTAAACAATGTAGGTGTTGCGTGAATAAAATAT 54402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253038797269250