Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887945.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq24 280 2e-70 seq290 181 2e-40 seq157 125 1e-23 >seq24 Length=118493 Score = 280 bits (310), Expect = 2e-70 Identities = 557/819 (68%), Gaps = 9/819 (1%) Strand=Plus/Plus Query 17869 GTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCAT 17928 ||||||| ||||| |||| || |||||||| || ||||||| || ||||| | ||| Sbjct 55729 GTATTCTGCGACTCTTTTTTCAAAGAAATTGGTTTTTCCTTGTAAAGATATATTTTCCAT 55788 Query 17929 AAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTATAATAATCT 17988 |||||||||||||| || || |||| ||| | || || ||| | | Sbjct 55789 GAAATCAAATGGATTTTCAGTGTTGTAATGTTTAGAGAATCCTAGATCAACTAAGAGATT 55848 Query 17989 ATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAA 18048 || || |||||||| | || | |||| | | || ||||| || | || || | Sbjct 55849 GTCAGCCACAAATTCTATGTAATTACACATAGATTTACAGTTCATTCCAATTAAACTTAC 55908 Query 18049 AGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTAT 18108 |||||| ||| || |||||||| || || | || | ||||| | ||| | || Sbjct 55909 GGGTAGACTTTCAGAAACAAATTCTTGTTCAATTGCTACTGCTTCTTTAACTATTTCGAT 55968 Query 18109 TACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGCAAAATC 18168 ||| | | ||| ||| | || |||| || ||| | ||| ||||| || Sbjct 55969 TACTGTTTCATATGGTGCTTTTTCTTCTAAGTGAGCATT---TAAGAGACATGCAAATTC 56025 Query 18169 AGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTAT 18228 | || | ||||||||||| |||||||| || || || | || ||||||| Sbjct 56026 AACATGCACTCCTTCATCTCTACTGATTAATTCATTGGAGAAAGTAAGACCTGGCATTAA 56085 Query 18229 ACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAAC 18288 || | |||||| ||||| ||||| ||||| ||| | ||| ||||| ||||| || || Sbjct 56086 TCCACGTTTTTTAAGCCAGAATATGGATGCAAAAGATCCAGAGAAGAAAATACCTTCTAC 56145 Query 18289 GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGTATCCATTTTTG 18348 |||||| || || |||| |||| |||||||| |||| || | ||||||||| Sbjct 56146 GCACGCAAATGCAATTATTCTTGTAGCAAAACATGATTTTTTATCCGTTATCCATTTCAT 56205 Query 18349 TGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAAATCATC 18408 | ||| ||| ||| || ||||| | || || ||||| ||| ||| Sbjct 56206 AGTCCAGTCTGCTTTATTTTTAATTGTTGGTATTGTAGAAATTGCGTTAAATAAAAAATC 56265 Query 18409 TTTTT-CTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTA 18467 ||||| || | | ||| | ||||| || || |||| ||| || ||||| |||||||||| Sbjct 56266 TTTTTTCTCTTGT-TCTCTAATATATGTTTCTATTAGCAATGAGTACATCTCAGAATGTA 56324 Query 18468 TGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATAT-TGAATCTC- 18525 | |||| || ||| || || | ||||| ||||||| || || ||| |||| || Sbjct 56325 TATTTTCTATCATTATTTGGAATCCATAAACACATCTAGCTTCTGG-TATCTGAACTTCC 56383 Query 18526 GCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGC 18585 ||| ||||| |||||| | ||| |||||||| || || || | | ||| |||||||| Sbjct 56384 GCTGCAAAAT-TTTCTAAAAGATTTTCATTAACAATCCCATCTGATGCTGCAAAAAATGC 56442 Query 18586 CAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTCATCTATATC 18645 ||| ||||| | || |||||| |||||| ||| || ||| ||||| || |||| ||| Sbjct 56443 CAACACATAACTTATAAAATGTCTTTCATCATCATTAAGACCATTCCAATCGTCTAAATC 56502 Query 18646 TTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGA 18684 || |||| ||| |||||||| | |||||||| ||||| Sbjct 56503 ATTAGATAAATCTACTTCTTCAGCAGTCCAAAACGATGA 56541 >seq290 Length=54858 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 atgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| ||||||| | || |||||||| ||||| | ||||| ||| ||||| Sbjct 34070 ATGCAGATCTTTGTTAAAACTCTCACAGGAAAAACAATTACTCTTGAAGTAGAAAATTCT 34011 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || || ||| ||||| ||||||||||| ||||||||||| ||| Sbjct 34010 GATACTATAGAAAATGTAAAGGCTAAGATACAGGATAAAGAAGGAATACCTCCAGATCAA 33951 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||| | ||| || || |||||||| ||| ||||| ||| ||||||||| Sbjct 33950 CAGAGATTGATATTTGCAGGAAAACAGCTCGAGGATGGTAGAACATTAAGCGATTATAAT 33891 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 ||| || || | ||| | |||||||| |||||||||||||| ||| Sbjct 33890 ATACAGAAGGAATCTACGTTGCATTTAGTATTAAGATTAAGAGGTGGT 33843 >seq157 Length=84007 Score = 125 bits (138), Expect = 1e-23 Identities = 193/273 (71%), Gaps = 7/273 (3%) Strand=Plus/Plus Query 155777 AAACaataaagtatttattgtttataataaaaatttatgtaataaaatgcaaatatttat 155836 ||| ||||| |||||||| ||| | |||| ||| || |||||| |||||| | Sbjct 51878 AAAAAATAA--TATTTATTTTTTT--ACAAAATTTT---TACCCCAATGCAGATATTTGT 51930 Query 155837 taaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAA 155896 ||||| | || || || || || ||| ||||||||||| | || || ||| Sbjct 51931 CAAAACGCTTACGGGCAAGACAATCACACTAGAAGTCGAATCCACCGACTCCATAGAAAA 51990 Query 155897 CGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTA 155956 || ||| ||||||||||| || ||||| ||||||||||| |||||||||||||| | Sbjct 51991 TGTCAAAGCAAAAATACAAGACAAGGAAGGAATACCTCCAGATCAACAAAGATTGATATT 52050 Query 155957 TGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGC 156016 ||| ||||| || | |||||| ||||| || ||||| ||||| ||||| | Sbjct 52051 TGCAGGTAAACAATTGGAAGATGGTAGAACATTGAGTGATTACAATATCCAGAAAGAATC 52110 Query 156017 GACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || |||||||| || | ||||| || || || Sbjct 52111 TACACTTCATTTGGTTCTTAGATTGAGGGGAGG 52143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731868432124000