Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Spraguea_20lophii_20[genbank_20GCA_5F001887945.1_202016-12-01] 390 sequences; 5,764,773 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq5 105 8e-18 seq390 102 1e-16 seq367 98.7 1e-15 seq301 89.7 7e-13 >seq5 Length=4344 Score = 105 bits (116), Expect = 8e-18 Identities = 199/287 (69%), Gaps = 13/287 (5%) Strand=Plus/Plus Query 168835 AAATGGTTCTTCCCCCTTGTCACACTTTAGTGCAATTTTATGTAAGGAAAAAATCAATCT 168894 |||||| |||||| || ||||| |||| | ||||||||||| | | | | ||| | Sbjct 82 AAATGGCTCTTCCACCATGTCATTGTTTATTTCAATTTTATGTC--GCAGATAACAAATT 139 Query 168895 TAGATTGTCAGTTGTATCAAAGATCAGCTGATTTAGGATTAGGAGTACCTTATAATATTG 168954 || ||||| || ||||||||||| | |||| | ||||| |||||||||| |||||||| Sbjct 140 AAG-TTGTCTTTTATATCAAAGATCTGGTGATATGGGATTGGGAGTACCTTTTAATATTG 198 Query 168955 GATTTTATTCATTTTTAAC---ACTTGTGCTAA--GTAAATGGTGTAATTTGACGCCTGG 169009 |||||| || | | | | ||| || || | ||| ||| || || || Sbjct 199 CTAGTTATTCCCTTCTTGCTTTAATGGTGGCAAAGGTTACTGG----ATTAGA-ACCAGG 253 Query 169010 AAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAACCATGTTGAACCTTTAAA 169069 | ||||| ||| |||| ||||||||||| | ||| || || | ||||| |||| Sbjct 254 TGAATTTATCCATTCTTTAGGAGATGTTCATTTATATGAGAATCACATCGAACCAATAAA 313 Query 169070 GGTTCAATTGAAAAGAAAACCATATTCTTTTCCAAATGTTAAATTTA 169116 ||||| |||||| ||| ||| | || || || ||||||||| Sbjct 314 AAAGCAATTAGAAAGAACACCTTATCCATTCCCTAAAATTAAATTTA 360 >seq390 Length=4512 Score = 102 bits (112), Expect = 1e-16 Identities = 198/287 (69%), Gaps = 13/287 (5%) Strand=Plus/Plus Query 168835 AAATGGTTCTTCCCCCTTGTCACACTTTAGTGCAATTTTATGTAAGGAAAAAATCAATCT 168894 |||||| |||||| || ||||| |||| | ||||||||||| | | ||| ||| Sbjct 82 AAATGGCTCTTCCACCATGTCATTGTTTATTTCAATTTTATGTC-GCTGATAATAAAT-- 138 Query 168895 TAGATTGTCAGTTGTATCAAAGATCAGCTGATTTAGGATTAGGAGTACCTTATAATATTG 168954 || ||||| || ||||||||||| | |||| | ||||| |||||||||| |||||||| Sbjct 139 TAAGTTGTCTTTTATATCAAAGATCCGGTGATATGGGATTGGGAGTACCTTTTAATATTG 198 Query 168955 GATTTTATTCATTTTTAAC---ACTTGTG--CTAAGTAAATGGTGTAATTTGACGCCTGG 169009 ||||||| || | | | | ||| |||| | ||| ||| || || || Sbjct 199 CTAGTTATTCACTTCTTGCTTTAATGGTGGCAAAAGTTACTGG----ATTAGA-ACCAGG 253 Query 169010 AAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAACCATGTTGAACCTTTAAA 169069 | ||||| ||| |||| || |||||||| | ||| || || |||| || |||| Sbjct 254 TGAATTTATCCATTCTTTAGGTGATGTTCATTTATATGAGAATCACATTGAGCCAATAAA 313 Query 169070 GGTTCAATTGAAAAGAAAACCATATTCTTTTCCAAATGTTAAATTTA 169116 ||| | |||||| ||| ||| | || || || ||||||||| Sbjct 314 AAAGCAACTTGAAAGAACACCTTATCCATTCCCTAAAATTAAATTTA 360 >seq367 Length=8762 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/192 (73%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 192926 AACGGAAACAGTATCTCATACATTAAATTATCCACAAAAACCCCTTGTTACCAC-AGAT- 192983 || ||| ||| |||| ||| ||| |||||| |||||||| | || ||||| |||| Sbjct 7165 AATGGATACATTATCAAATATTTTATTTTATCCTCAAAAACCTTTGGTAACCACGAGATC 7224 Query 192984 ATTGCAAAATTTAATAAATTAGACGATTATCCAAATGGTATTAATGCTATTGTTGCTATA 193043 | || || || ||| || | ||| |||| | | | ||| || || || ||||| || Sbjct 7225 AATGGAATATCTAA-AAGTCAGAGAATTACCTATA-GGTCAAAACGCAATAGTTGCAGTA 7282 Query 193044 GCTTGCTATACTGGTTATAATCAAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAA 193103 || || |||||||| |||||||||||||| ||||||||| | ||| | | | || || Sbjct 7283 GCATGTTATACTGGATATAATCAAGAAGATAGTATTATTATGAATCAGAGTGCAATAGAT 7342 Query 193104 AGAGGATTATTT 193115 ||||| |||||| Sbjct 7343 AGAGGTTTATTT 7354 >seq301 Length=54622 Score = 89.7 bits (98), Expect = 7e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 51990 TATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCATATGGAGCT 52049 ||||| |||||||||||||| |||||||||||||||||| | || ||| ||||| | Sbjct 19292 TATAACGCTGATTTTGATGGTGATGAAATGAATTTACATATGCCACAAACATATAATACA 19351 Query 52050 ACTGCTGAATTACAAGAATTAA 52071 | ||||||||||||||||||| Sbjct 19352 AAAGCTGAATTACAAGAATTAA 19373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635174503509200